Hb_001804_040

Information

Type -
Description -
Location Contig1804: 59604-63533
Sequence    

Annotation

kegg
ID rcu:RCOM_1158120
description hypothetical protein
nr
ID XP_002529873.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q945M8
description CASP-like protein 5B2 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1
trembl
ID B9SV54
description CASP-like protein OS=Ricinus communis GN=RCOM_1158120 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17448: 59581-63521 , PASA_asmbl_17449: 59581-63026 , PASA_asmbl_17451: 60854-61174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001951_110 0.0546668942 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
3 Hb_004204_030 0.0570302412 - - unknown [Populus trichocarpa]
4 Hb_000866_300 0.0648946392 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
5 Hb_001754_150 0.0740798885 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
6 Hb_001019_090 0.0750757183 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
7 Hb_001366_230 0.0757567542 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006569_020 0.0764594039 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
9 Hb_000260_050 0.0845324908 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
10 Hb_000152_430 0.0865712799 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
11 Hb_001454_330 0.0885151162 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_000417_110 0.0889848559 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
13 Hb_000392_270 0.0924587086 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_002477_240 0.093009905 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
15 Hb_001104_120 0.0945245141 - - -
16 Hb_000977_080 0.0955549586 - - type II inositol 5-phosphatase, putative [Ricinus communis]
17 Hb_022250_040 0.0972077255 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
18 Hb_000316_110 0.0982467587 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_027472_180 0.0982589766 - - hypothetical protein L484_016229 [Morus notabilis]
20 Hb_000318_380 0.0987249435 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001804_040 Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_001951_110--Hb_000866_300 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_002477_240 Hb_002477_240 Hb_001754_150--Hb_002477_240 Hb_001754_150--Hb_001019_090 Hb_001754_150--Hb_000260_050 Hb_042202_010 Hb_042202_010 Hb_001754_150--Hb_042202_010 Hb_001754_150--Hb_000392_270 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.3564 10.7091 10.6272 10.5376 81.4137 72.6763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7581 107.737 55.1803 19.4983 6.47622

CAGE analysis