Hb_006569_020

Information

Type -
Description -
Location Contig6569: 20452-20673
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22990g
description POPTRDRAFT_724996; hypothetical protein
nr
ID XP_002315305.1
description hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
swissprot
ID Q9FGZ9
description Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1
trembl
ID B9HUF6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22990g PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52760: 18522-20760
cDNA
(Sanger)
(ID:Location)		 010_G22.ab1: 18543-20702 , 015_K23.ab1: 18522-20728 , 024_B10.ab1: 18626-20760 , 025_C13.ab1: 18522-20726 , 045_J19.ab1: 18522-20726 , 049_O08.ab1: 18614-20718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_020 0.0 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
2 Hb_000316_110 0.0623101487 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
3 Hb_022250_040 0.0672758998 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
4 Hb_001776_110 0.0691411384 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
5 Hb_001437_040 0.0716523474 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
6 Hb_159558_030 0.0728936308 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
7 Hb_004662_030 0.0730776461 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
8 Hb_003125_040 0.0733772002 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
9 Hb_007919_050 0.0745166842 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
10 Hb_001804_040 0.0764594039 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009711_030 0.0786002988 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
12 Hb_118419_020 0.0790404225 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
13 Hb_000282_060 0.080180723 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
14 Hb_118977_020 0.0802394334 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
15 Hb_004204_030 0.0804766303 - - unknown [Populus trichocarpa]
16 Hb_000500_130 0.0809970954 - - small GTPase [Hevea brasiliensis]
17 Hb_033491_010 0.0835481372 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
18 Hb_003540_040 0.0841352621 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
19 Hb_001019_090 0.0847120277 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
20 Hb_003086_110 0.0851402049 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]

Gene co-expression network

sample Hb_006569_020 Hb_006569_020 Hb_000316_110 Hb_000316_110 Hb_006569_020--Hb_000316_110 Hb_022250_040 Hb_022250_040 Hb_006569_020--Hb_022250_040 Hb_001776_110 Hb_001776_110 Hb_006569_020--Hb_001776_110 Hb_001437_040 Hb_001437_040 Hb_006569_020--Hb_001437_040 Hb_159558_030 Hb_159558_030 Hb_006569_020--Hb_159558_030 Hb_004662_030 Hb_004662_030 Hb_006569_020--Hb_004662_030 Hb_007166_050 Hb_007166_050 Hb_000316_110--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000316_110--Hb_001019_090 Hb_009711_030 Hb_009711_030 Hb_000316_110--Hb_009711_030 Hb_000316_110--Hb_159558_030 Hb_000316_110--Hb_022250_040 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_003540_040 Hb_003540_040 Hb_001776_110--Hb_003540_040 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_001776_110--Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_001776_110--Hb_002097_110 Hb_000029_030 Hb_000029_030 Hb_001776_110--Hb_000029_030 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000500_130 Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_004662_030--Hb_002097_110 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3655.35 474.546 490.285 760.537 3024.71 3330.49
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4143.9 3331.95 2502.86 832.319 430.668

CAGE analysis