Hb_002097_110

Information

Type -
Description -
Location Contig2097: 212114-215501
Sequence    

Annotation

kegg
ID rcu:RCOM_1353400
description ankyrin repeat-containing protein, putative
nr
ID XP_002519454.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q99728
description BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1 PE=1 SV=2
trembl
ID B9S0D5
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1353400 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ankyrin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21688: 212190-215462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_110 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_004662_030 0.0364055688 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
3 Hb_015001_020 0.0549819068 - - PREDICTED: la-related protein 6B [Jatropha curcas]
4 Hb_007426_230 0.0558504785 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
5 Hb_009711_030 0.0572161734 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
6 Hb_027472_180 0.0631922122 - - hypothetical protein L484_016229 [Morus notabilis]
7 Hb_001824_070 0.0634006638 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
8 Hb_000376_050 0.0635337169 - - polyadenylate-binding protein, putative [Ricinus communis]
9 Hb_003540_040 0.0645064207 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
10 Hb_000371_080 0.0660319659 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
11 Hb_022250_040 0.0673629504 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
12 Hb_125000_010 0.0682805485 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_010436_070 0.0696633715 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
14 Hb_000032_570 0.0697804954 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_118419_020 0.0701033964 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
16 Hb_000928_240 0.0713459499 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
17 Hb_001477_110 0.0724863827 - - prohibitin, putative [Ricinus communis]
18 Hb_001776_110 0.0732392723 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
19 Hb_004195_160 0.0737751642 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
20 Hb_003020_230 0.0740211732 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]

Gene co-expression network

sample Hb_002097_110 Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_004662_030--Hb_015001_020 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_000032_570 Hb_000032_570 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_009711_030--Hb_001824_070 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_027472_180--Hb_000376_050 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_027472_180--Hb_007426_230 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.451 35.6026 29.8077 36.131 136.008 162.759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
164.409 192.293 138.209 73.182 36.0269

CAGE analysis