Hb_027472_180

Information

Type -
Description -
Location Contig27472: 117659-120424
Sequence    

Annotation

kegg
ID cic:CICLE_v10006169mg
description hypothetical protein
nr
ID XP_010093019.1
description hypothetical protein L484_016229 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9R2W8
description Uncharacterized protein OS=Morus notabilis GN=L484_016229 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28775: 117792-120438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_180 0.0 - - hypothetical protein L484_016229 [Morus notabilis]
2 Hb_002097_110 0.0631922122 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000703_140 0.0645146046 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
4 Hb_000376_050 0.0712953582 - - polyadenylate-binding protein, putative [Ricinus communis]
5 Hb_004662_030 0.0727889281 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
6 Hb_007101_130 0.0757099932 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007426_230 0.0762363182 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_000956_010 0.0774663086 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_000221_220 0.0785634403 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_000928_240 0.0808102916 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_022250_040 0.0825647626 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
12 Hb_002603_100 0.0842187055 - - ATATH9, putative [Ricinus communis]
13 Hb_000883_050 0.085135422 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
14 Hb_011794_070 0.0852411549 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
15 Hb_004108_050 0.0853071165 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_009711_030 0.0868947748 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
17 Hb_000260_080 0.0873264039 - - thioredoxin H-type 1 [Hevea brasiliensis]
18 Hb_001427_120 0.0883313822 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_006693_030 0.0894386361 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
20 Hb_001824_070 0.0896305177 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_027472_180 Hb_027472_180 Hb_002097_110 Hb_002097_110 Hb_027472_180--Hb_002097_110 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_000376_050 Hb_000376_050 Hb_027472_180--Hb_000376_050 Hb_004662_030 Hb_004662_030 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_007426_230 Hb_007426_230 Hb_027472_180--Hb_007426_230 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_002097_110--Hb_007426_230 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_000260_080 Hb_000260_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_000703_140--Hb_009711_030 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_004662_030--Hb_015001_020 Hb_022250_040 Hb_022250_040 Hb_004662_030--Hb_022250_040 Hb_007672_010 Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_007101_130--Hb_000376_050 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.486 17.0475 26.2741 21.7774 109.534 101.908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.003 155.54 113.623 51.4487 16.4242

CAGE analysis