Hb_001427_120

Information

Type -
Description -
Location Contig1427: 128271-137823
Sequence    

Annotation

kegg
ID tcc:TCM_037705
description Mitochondrial ATP synthase subunit G protein
nr
ID XP_012076794.1
description PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07317 PE=4 SV=1
Gene Ontology
ID GO:0000276
description mitochondrial atp synthase subunit g protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11316: 128289-137705 , PASA_asmbl_11317: 128295-137705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_120 0.0 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
2 Hb_000956_010 0.0465913496 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_001718_100 0.0493895745 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_000086_570 0.0615228424 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_000376_050 0.0615465195 - - polyadenylate-binding protein, putative [Ricinus communis]
6 Hb_071736_020 0.0644257337 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
7 Hb_022250_040 0.0645828846 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_000089_160 0.0674173387 - - 60S ribosomal protein L5B [Hevea brasiliensis]
9 Hb_011794_070 0.0683005016 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
10 Hb_002078_450 0.0683512348 - - nuclear transport factor, putative [Ricinus communis]
11 Hb_000883_050 0.0683726668 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
12 Hb_002025_320 0.0725197201 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
13 Hb_084849_020 0.0742680979 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_021650_030 0.0744090263 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
15 Hb_023386_080 0.0757646015 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_002527_070 0.0759674953 - - axonemal dynein light chain, putative [Ricinus communis]
17 Hb_004662_030 0.07648549 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
18 Hb_004899_320 0.0771407811 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
19 Hb_005686_110 0.0788707861 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
20 Hb_000703_140 0.0790058995 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_001427_120 Hb_001427_120 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_000956_010--Hb_000376_050 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_000086_570--Hb_002078_450 Hb_000086_570--Hb_071736_020 Hb_021650_030 Hb_021650_030 Hb_000086_570--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_071736_020--Hb_002078_450 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_071736_020--Hb_021650_030 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
251.573 46.5232 47.3515 69.7855 205.253 292.163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.668 393.533 336.69 94.528 35.5072

CAGE analysis