Hb_000975_290

Information

Type -
Description -
Location Contig975: 247600-249803
Sequence    

Annotation

kegg
ID rcu:RCOM_0465830
description 30S ribosomal protein S8, putative
nr
ID XP_012081549.1
description PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID I3NML3
description 40S ribosomal protein S15C OS=Hevea brasiliensis GN=RPS15C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64025: 247619-249646
cDNA
(Sanger)
(ID:Location)		 021_G19.ab1: 247622-249576 , 042_O19.ab1: 247630-249553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_290 0.0 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
2 Hb_002890_280 0.0606453365 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_133271_020 0.0617065484 - - prohibitin, putative [Ricinus communis]
4 Hb_158092_070 0.0649905805 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_001030_120 0.0677743086 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_002686_270 0.0686367487 - - conserved hypothetical protein [Ricinus communis]
7 Hb_071736_020 0.0699323359 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
8 Hb_004662_030 0.0706975584 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
9 Hb_022250_040 0.0712150712 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
10 Hb_001243_050 0.0714444041 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
11 Hb_004223_130 0.0744196722 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002078_450 0.0749068526 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_000376_050 0.0758963822 - - polyadenylate-binding protein, putative [Ricinus communis]
14 Hb_000029_030 0.0759548386 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_002603_100 0.076329325 - - ATATH9, putative [Ricinus communis]
16 Hb_000956_010 0.0787427743 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
17 Hb_006447_010 0.0813966637 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
18 Hb_005062_070 0.0815054034 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
19 Hb_003052_100 0.0816870267 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_007672_010 0.0817462741 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_290 Hb_000975_290 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_001157_030 Hb_001157_030 Hb_002890_280--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_009382_020 Hb_009382_020 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_133271_020--Hb_001030_120 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_002686_270--Hb_158092_070 Hb_000152_140 Hb_000152_140 Hb_002686_270--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_002078_450 Hb_002078_450 Hb_071736_020--Hb_002078_450 Hb_001718_100 Hb_001718_100 Hb_071736_020--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
950.389 239.136 159.598 239.324 650.315 942.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
893.893 882.813 993.066 319.514 93.4017

CAGE analysis