Hb_000754_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig754: 29600-32933
Sequence    

Annotation

kegg
ID tcc:TCM_005895
description Zinc finger family protein isoform 1
nr
ID XP_012065543.1
description PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
swissprot
ID E0X9N4
description Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1
trembl
ID A0A067L4R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16748 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger ccch domain-containing protein 69 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56971: 28813-32904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000754_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
2 Hb_000190_140 0.0476381997 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
3 Hb_000120_950 0.0550834002 - - PREDICTED: protein GRIP [Jatropha curcas]
4 Hb_002477_160 0.0633452509 - - hypothetical protein L484_013453 [Morus notabilis]
5 Hb_007951_050 0.0654124187 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_010381_070 0.0693230824 - - PREDICTED: protein STU1-like [Jatropha curcas]
7 Hb_000554_020 0.0714417592 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
8 Hb_175338_030 0.0724406219 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
9 Hb_005062_070 0.0736187944 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
10 Hb_029584_130 0.0750590427 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
11 Hb_002496_030 0.0759889836 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_001623_420 0.0762569997 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_001454_210 0.0773663014 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
14 Hb_001159_100 0.0776862296 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
15 Hb_000567_260 0.0778164571 - - BnaA09g41440D [Brassica napus]
16 Hb_015306_020 0.0781403926 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
17 Hb_019654_100 0.0783792313 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
18 Hb_000062_240 0.078399537 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
19 Hb_000030_010 0.0784151059 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
20 Hb_001248_130 0.0792981438 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000754_060 Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_000190_140--Hb_000120_950 Hb_009111_050 Hb_009111_050 Hb_000190_140--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_000190_140--Hb_001454_210 Hb_005062_070 Hb_005062_070 Hb_000190_140--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_000190_140--Hb_015306_020 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_001623_420 Hb_001623_420 Hb_000120_950--Hb_001623_420 Hb_000120_950--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_011918_080 Hb_011918_080 Hb_002477_160--Hb_011918_080 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_000139_410 Hb_000139_410 Hb_010381_070--Hb_000139_410 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_004109_200 Hb_004109_200 Hb_010381_070--Hb_004109_200 Hb_010381_070--Hb_001623_420 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.2304 38.6148 21.2808 24.6737 57.1659 75.9029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3886 60.8194 97.599 30.2353 16.958

CAGE analysis