Hb_007951_050

Information

Type -
Description -
Location Contig7951: 45030-46232
Sequence    

Annotation

kegg
ID rcu:RCOM_0898900
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002517613.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8GW57
description Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2
trembl
ID B9RV44
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0898900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58507: 44519-49344 , PASA_asmbl_58508: 44519-45504 , PASA_asmbl_58509: 45624-45912
cDNA
(Sanger)
(ID:Location)		 009_O04.ab1: 44526-45095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000421_260 0.0602873056 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
3 Hb_000754_060 0.0654124187 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
4 Hb_002496_030 0.065536018 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
5 Hb_001159_100 0.0661336286 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
6 Hb_015306_020 0.0673621837 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
7 Hb_028872_140 0.0684796472 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
8 Hb_005062_070 0.0688402334 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_009111_050 0.0698179524 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
10 Hb_000120_950 0.0710142239 - - PREDICTED: protein GRIP [Jatropha curcas]
11 Hb_001454_210 0.0710618888 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
12 Hb_000022_250 0.0718968012 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
13 Hb_000190_140 0.0740388065 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_007380_070 0.0752272501 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000554_020 0.0756946559 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
16 Hb_189003_080 0.0757083175 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
17 Hb_000567_260 0.0762506627 - - BnaA09g41440D [Brassica napus]
18 Hb_006332_020 0.0762642261 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_000030_010 0.0762910877 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
20 Hb_001671_020 0.0764530923 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]

Gene co-expression network

sample Hb_007951_050 Hb_007951_050 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_002890_340 Hb_002890_340 Hb_000421_260--Hb_002890_340 Hb_001720_050 Hb_001720_050 Hb_000421_260--Hb_001720_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000421_260--Hb_004600_040 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_029584_130 Hb_029584_130 Hb_001159_100--Hb_029584_130 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_001159_100--Hb_002496_030 Hb_000427_050 Hb_000427_050 Hb_001159_100--Hb_000427_050 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_001454_210 Hb_001454_210 Hb_015306_020--Hb_001454_210 Hb_015306_020--Hb_002890_340 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87993 3.22812 2.19726 1.8027 5.61195 8.8241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98652 6.42728 8.99811 2.93145 2.76607

CAGE analysis