Hb_000453_170

Information

Type -
Description -
Location Contig453: 114885-117548
Sequence    

Annotation

kegg
ID rcu:RCOM_1394930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532584.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8GZA6
description Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1
trembl
ID B9T2W5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1394930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43266: 114993-115164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_170 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_011316_050 0.0495507634 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
3 Hb_002496_030 0.0528557498 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
4 Hb_006316_040 0.0603470728 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
5 Hb_004221_020 0.0654267765 - - protein binding protein, putative [Ricinus communis]
6 Hb_000827_070 0.071265189 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_000289_060 0.0716036461 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
8 Hb_077562_050 0.0721648865 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
9 Hb_004684_010 0.0756727888 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
10 Hb_004155_010 0.0778648867 - - PREDICTED: la protein 1 [Jatropha curcas]
11 Hb_007416_180 0.0781027782 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_002027_250 0.078170629 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001242_060 0.0782969355 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
14 Hb_005188_050 0.0799486189 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
15 Hb_001595_030 0.0804341945 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
16 Hb_010139_040 0.0805523286 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001507_020 0.0808314473 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
18 Hb_002835_370 0.0814341632 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
19 Hb_000072_220 0.0828410419 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
20 Hb_000392_300 0.0832779225 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]

Gene co-expression network

sample Hb_000453_170 Hb_000453_170 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_002496_030 Hb_002496_030 Hb_000453_170--Hb_002496_030 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_011316_050--Hb_006316_040 Hb_011316_050--Hb_002496_030 Hb_011316_050--Hb_000827_070 Hb_001242_060 Hb_001242_060 Hb_011316_050--Hb_001242_060 Hb_004684_010 Hb_004684_010 Hb_011316_050--Hb_004684_010 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_008500_010 Hb_008500_010 Hb_006316_040--Hb_008500_010 Hb_006316_040--Hb_000827_070 Hb_010172_090 Hb_010172_090 Hb_006316_040--Hb_010172_090 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_001248_060 Hb_001248_060 Hb_000289_060--Hb_001248_060 Hb_000538_270 Hb_000538_270 Hb_000289_060--Hb_000538_270 Hb_002686_030 Hb_002686_030 Hb_000289_060--Hb_002686_030 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05093 4.73448 2.91517 1.94285 5.42681 6.15244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61215 5.6848 7.35798 3.4671 3.23233

CAGE analysis