Hb_001242_060

Information

Type -
Description -
Location Contig1242: 77767-84084
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06540g
description POPTRDRAFT_643441; hypothetical protein
nr
ID XP_011044272.1
description PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GT77
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06540g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07340: 77825-84105 , PASA_asmbl_07341: 82390-82823
cDNA
(Sanger)
(ID:Location)		 035_I04.ab1: 78148-84085 , 047_C14.ab1: 78121-84105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_060 0.0 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
2 Hb_031527_040 0.0481659887 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
3 Hb_000757_060 0.0551507864 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
4 Hb_000016_250 0.0556119429 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
5 Hb_000030_300 0.0558179574 - - Thioredoxin, putative [Ricinus communis]
6 Hb_000563_320 0.0570986246 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
7 Hb_005779_060 0.0590439618 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
8 Hb_000876_070 0.0595206142 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
9 Hb_002739_100 0.0610767118 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
10 Hb_036790_100 0.0612815145 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_058999_020 0.0614780091 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
12 Hb_001157_040 0.0618227356 - - casein kinase, putative [Ricinus communis]
13 Hb_000465_460 0.063560523 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
14 Hb_001595_030 0.0636473133 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
15 Hb_007416_180 0.0637044241 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_007691_030 0.0638601539 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
17 Hb_002044_080 0.0654763996 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
18 Hb_000538_270 0.0661775277 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
19 Hb_000866_220 0.0669019407 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
20 Hb_096563_010 0.0691540979 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]

Gene co-expression network

sample Hb_001242_060 Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060 Hb_031527_040--Hb_000563_320 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_058999_020 Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_000538_270 Hb_000538_270 Hb_000757_060--Hb_000538_270 Hb_002499_040 Hb_002499_040 Hb_000757_060--Hb_002499_040 Hb_000317_240 Hb_000317_240 Hb_000757_060--Hb_000317_240 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060 Hb_000016_250--Hb_000563_320 Hb_000016_250--Hb_005779_060 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_000563_320--Hb_001157_040 Hb_000563_320--Hb_005779_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.8408 71.5615 49.3406 47.4417 75.7159 97.6405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.1786 116.033 100.664 56.256 48.151

CAGE analysis