Hb_011995_010

Information

Type -
Description -
Location Contig11995: 15695-18439
Sequence    

Annotation

kegg
ID rcu:RCOM_1375720
description dc50, putative
nr
ID XP_002523766.1
description dc50, putative [Ricinus communis]
swissprot
ID Q9LIN3
description Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1
trembl
ID B9SCP7
description Dc50, putative OS=Ricinus communis GN=RCOM_1375720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein rz1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05967: 15743-18468 , PASA_asmbl_05968: 15731-18468
cDNA
(Sanger)
(ID:Location)		 019_D19.ab1: 17083-17366

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011995_010 0.0 - - dc50, putative [Ricinus communis]
2 Hb_000010_400 0.0508385529 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
3 Hb_001248_060 0.0528309315 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010618_010 0.0542365565 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
5 Hb_001409_020 0.0556041773 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
6 Hb_000883_020 0.0573412543 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_000563_320 0.0576187112 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
8 Hb_000331_550 0.0581484326 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
9 Hb_001163_050 0.0596115135 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
10 Hb_010381_090 0.0628311998 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
11 Hb_000016_250 0.0628326208 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
12 Hb_013399_100 0.0629818969 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000580_180 0.0638585124 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006455_120 0.0638794291 - - n6-DNA-methyltransferase, putative [Ricinus communis]
15 Hb_008453_140 0.0658578611 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
16 Hb_006634_070 0.0665030899 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
17 Hb_002530_030 0.0671333078 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
18 Hb_002518_280 0.0678312425 - - phosphate transporter [Manihot esculenta]
19 Hb_023344_120 0.0679189586 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
20 Hb_032202_140 0.0679990422 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011995_010 Hb_011995_010 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320 Hb_001248_060--Hb_010618_010 Hb_001248_060--Hb_001409_020 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_015934_040 Hb_015934_040 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_010618_010--Hb_001409_020 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_000016_250 Hb_000016_250 Hb_000563_320--Hb_000016_250 Hb_001157_040 Hb_001157_040 Hb_000563_320--Hb_001157_040 Hb_031527_040 Hb_031527_040 Hb_000563_320--Hb_031527_040 Hb_005779_060 Hb_005779_060 Hb_000563_320--Hb_005779_060 Hb_001242_060 Hb_001242_060 Hb_000563_320--Hb_001242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.1689 60.9494 69.1683 57.2113 75.0524 81.2003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.6435 77.4082 88.4108 53.0095 49.1799

CAGE analysis