Hb_007813_040

Information

Type -
Description -
Location Contig7813: 44788-92512
Sequence    

Annotation

kegg
ID egr:104444212
description mediator of RNA polymerase II transcription subunit 34
nr
ID XP_012075080.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
swissprot
ID Q9FT73
description Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
trembl
ID A0A067KK94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10816 PE=4 SV=1
Gene Ontology
ID GO:0003676
description mediator of rna polymerase ii transcription subunit 34 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57989: 44850-62866 , PASA_asmbl_57992: 66973-82603 , PASA_asmbl_57993: 82988-92247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007813_040 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
2 Hb_000010_400 0.0566536031 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
3 Hb_003862_050 0.0682560918 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
4 Hb_002620_010 0.0709761017 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
5 Hb_000175_460 0.0741216522 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_000318_190 0.0754771617 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
7 Hb_000629_010 0.0776885848 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_000030_300 0.0783567637 - - Thioredoxin, putative [Ricinus communis]
9 Hb_001305_010 0.0789368019 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_000302_270 0.0793387959 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
11 Hb_011995_010 0.0802180589 - - dc50, putative [Ricinus communis]
12 Hb_000808_270 0.0809009112 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
13 Hb_002950_100 0.0818543691 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
14 Hb_001178_140 0.0821916955 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
15 Hb_001926_030 0.0844136445 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
16 Hb_001677_210 0.0849764393 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
17 Hb_000185_070 0.0850639732 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003528_010 0.0851788259 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
19 Hb_007951_060 0.0856534954 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_000521_320 0.0858908188 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]

Gene co-expression network

sample Hb_007813_040 Hb_007813_040 Hb_000010_400 Hb_000010_400 Hb_007813_040--Hb_000010_400 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_000629_010 Hb_000629_010 Hb_007813_040--Hb_000629_010 Hb_011995_010 Hb_011995_010 Hb_000010_400--Hb_011995_010 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_000302_270 Hb_000302_270 Hb_000010_400--Hb_000302_270 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000521_320 Hb_000521_320 Hb_000010_400--Hb_000521_320 Hb_003862_050--Hb_000175_460 Hb_019654_100 Hb_019654_100 Hb_003862_050--Hb_019654_100 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_003862_050--Hb_000010_400 Hb_000808_270 Hb_000808_270 Hb_002620_010--Hb_000808_270 Hb_002620_010--Hb_000318_190 Hb_003175_010 Hb_003175_010 Hb_002620_010--Hb_003175_010 Hb_143629_210 Hb_143629_210 Hb_002620_010--Hb_143629_210 Hb_000030_300 Hb_000030_300 Hb_002620_010--Hb_000030_300 Hb_002105_040 Hb_002105_040 Hb_000175_460--Hb_002105_040 Hb_000510_320 Hb_000510_320 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_007982_080 Hb_007982_080 Hb_000318_190--Hb_007982_080 Hb_012508_030 Hb_012508_030 Hb_000318_190--Hb_012508_030 Hb_002950_100 Hb_002950_100 Hb_000318_190--Hb_002950_100 Hb_000318_190--Hb_000010_400 Hb_000629_010--Hb_000808_270 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0754 10.729 12.3349 7.62511 12.9678 14.5946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2661 13.1499 18.2189 9.87604 4.03786

CAGE analysis