Hb_003092_040

Information

Type -
Description -
Location Contig3092: 59375-62799
Sequence    

Annotation

kegg
ID mdm:103451985
description uncharacterized LOC103451985
nr
ID XP_009363965.1
description PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
swissprot
ID Q8VZJ9
description Calmodulin-binding receptor-like cytoplasmic kinase 2 OS=Arabidopsis thaliana GN=CRCK2 PE=2 SV=1
trembl
ID A0A059CX84
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C043221 PE=4 SV=1
Gene Ontology
ID GO:0004674
description calmodulin-binding receptor-like cytoplasmic kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32669: 41443-62857 , PASA_asmbl_32670: 41369-62857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003092_040 0.0 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
2 Hb_007416_280 0.043420054 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005663_060 0.0482114162 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
4 Hb_000510_130 0.0547681618 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
5 Hb_007691_030 0.0559692884 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
6 Hb_032202_190 0.0585187953 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
7 Hb_003126_050 0.0611385116 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
8 Hb_005618_170 0.0616311113 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_000030_300 0.0636065682 - - Thioredoxin, putative [Ricinus communis]
10 Hb_000876_070 0.0648081717 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
11 Hb_025645_010 0.0652769564 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
12 Hb_032208_090 0.0663231888 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
13 Hb_005305_080 0.0665664056 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
14 Hb_000059_330 0.067681851 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_003417_020 0.0680314086 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
16 Hb_005357_080 0.0685775217 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
17 Hb_002026_180 0.0691223479 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_001242_060 0.0701545736 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
19 Hb_001758_100 0.0702424147 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
20 Hb_000329_030 0.0709703499 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003092_040 Hb_003092_040 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_032202_190--Hb_005305_080 Hb_032202_190--Hb_007691_030 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_003126_050--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.27 21.6584 19.5548 24.5407 28.4974 36.8149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.2034 40.9132 39.1948 24.247 13.6286

CAGE analysis