Hb_003428_030

Information

Type -
Description -
Location Contig3428: 19518-29349
Sequence    

Annotation

kegg
ID rcu:RCOM_1063210
description tRNA, putative (EC:2.1.1.36)
nr
ID XP_002521442.1
description tRNA, putative [Ricinus communis]
swissprot
ID Q80XC2
description tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1
trembl
ID B9S623
description tRNA, putative OS=Ricinus communis GN=RCOM_1063210 PE=4 SV=1
Gene Ontology
ID GO:0031515
description trna (adenine -n )-methyltransferase catalytic subunit trmt61a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35787: 19573-20867 , PASA_asmbl_35789: 20501-20972 , PASA_asmbl_35790: 20986-29394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_030 0.0 - - tRNA, putative [Ricinus communis]
2 Hb_007691_030 0.049051158 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
3 Hb_003525_010 0.0583701661 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
4 Hb_000093_160 0.0586368371 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
5 Hb_000038_170 0.0592678657 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
6 Hb_003125_120 0.060039876 - - PREDICTED: TITAN-like protein [Jatropha curcas]
7 Hb_000032_270 0.0641056726 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
8 Hb_000059_330 0.0645824025 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
9 Hb_003126_050 0.0679654685 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
10 Hb_000960_060 0.0682993702 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
11 Hb_002739_050 0.0683937931 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
12 Hb_000580_180 0.068831268 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000680_160 0.0689690145 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
14 Hb_024071_020 0.0690781154 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
15 Hb_000120_790 0.0692325315 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_000796_210 0.070151464 - - conserved hypothetical protein [Ricinus communis]
17 Hb_096563_010 0.070591564 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_000215_110 0.0726739618 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
19 Hb_000085_160 0.0729358556 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
20 Hb_005725_250 0.0730255567 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003428_030 Hb_003428_030 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_002518_280 Hb_002518_280 Hb_000038_170--Hb_002518_280 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_000879_200 Hb_000879_200 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_000680_160 Hb_000680_160 Hb_000032_270--Hb_000680_160 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_000032_270--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6377 7.9649 7.06797 9.30903 12.3327 11.6304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8653 15.6075 8.28891 8.12884 6.5642

CAGE analysis