Hb_000215_110

Information

Type -
Description -
Location Contig215: 77752-81303
Sequence    

Annotation

kegg
ID rcu:RCOM_1049350
description transferase, transferring pentosyl groups, putative
nr
ID XP_012076855.1
description PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
swissprot
ID Q10181
description Uncharacterized protein C3F10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.06c PE=4 SV=1
trembl
ID B9RKG8
description Transferase, transferring pentosyl groups, putative OS=Ricinus communis GN=RCOM_1049350 PE=4 SV=1
Gene Ontology
ID GO:0043399
description initiator trna phosphoribosyl transferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22176: 75318-77107 , PASA_asmbl_22177: 78226-81237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_110 0.0 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
2 Hb_002303_070 0.0493642856 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
3 Hb_000373_070 0.0512119438 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
4 Hb_003226_140 0.05454342 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
5 Hb_001279_150 0.0564399632 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
6 Hb_000331_260 0.0573636189 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
7 Hb_000580_180 0.0574431532 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000081_160 0.0588393842 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
9 Hb_058999_020 0.0588767669 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
10 Hb_001142_030 0.0592193955 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
11 Hb_003125_120 0.0599523367 - - PREDICTED: TITAN-like protein [Jatropha curcas]
12 Hb_003525_010 0.0600316871 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
13 Hb_002182_080 0.0609603221 - - 3-5 exonuclease, putative [Ricinus communis]
14 Hb_156279_020 0.0610079115 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
15 Hb_002078_350 0.0614849026 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_005357_080 0.0617884372 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
17 Hb_000227_080 0.0620683014 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001599_040 0.0625008505 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
19 Hb_000334_280 0.0643554669 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
20 Hb_001133_120 0.064980251 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_110 Hb_000215_110 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_003226_140--Hb_001599_040 Hb_003226_140--Hb_005357_080 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_005144_160 Hb_005144_160 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_001142_030 Hb_001142_030 Hb_000580_180--Hb_001142_030 Hb_000580_180--Hb_000120_670 Hb_002863_050 Hb_002863_050 Hb_000580_180--Hb_002863_050 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45699 3.55993 4.41364 4.93788 4.43801 6.78219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88108 7.66469 5.45392 5.0612 4.03947

CAGE analysis