Hb_003226_140

Information

Type -
Description -
Location Contig3226: 83694-86713
Sequence    

Annotation

kegg
ID rcu:RCOM_1178640
description small nuclear ribonucleoprotein U)1a,U)2b, putative
nr
ID XP_002523100.1
description small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
swissprot
ID Q39244
description U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1
trembl
ID B9SAT1
description Small nuclear ribonucleoprotein U1a,U2b, putative OS=Ricinus communis GN=RCOM_1178640 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u1 small nuclear ribonucleoprotein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34168: 83908-86700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_140 0.0 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
2 Hb_002303_070 0.0523555884 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
3 Hb_000215_110 0.05454342 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_002473_130 0.0612553952 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
5 Hb_000468_060 0.0636427793 - - ku P70 DNA helicase, putative [Ricinus communis]
6 Hb_001599_040 0.0643614928 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
7 Hb_005357_080 0.0647633916 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
8 Hb_001662_150 0.0654144307 - - Scaffold attachment factor B1 [Medicago truncatula]
9 Hb_001279_150 0.0662171794 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
10 Hb_065500_060 0.0689084771 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
11 Hb_000019_030 0.0701307007 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
12 Hb_000146_070 0.07189902 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
13 Hb_001357_350 0.0719746938 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003918_010 0.0753717433 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
15 Hb_000081_160 0.0757884457 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
16 Hb_000768_090 0.0761736382 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
17 Hb_000039_220 0.0762488857 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
18 Hb_000035_180 0.0764571013 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
19 Hb_008748_040 0.0765056857 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
20 Hb_007017_030 0.0773038198 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_140 Hb_003226_140 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_002303_070--Hb_000215_110 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060 Hb_000019_030 Hb_000019_030 Hb_000468_060--Hb_000019_030 Hb_001575_090 Hb_001575_090 Hb_000468_060--Hb_001575_090 Hb_000768_090 Hb_000768_090 Hb_000468_060--Hb_000768_090 Hb_000035_180 Hb_000035_180 Hb_000468_060--Hb_000035_180 Hb_000120_670 Hb_000120_670 Hb_000468_060--Hb_000120_670 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0332 7.01317 13.362 12.5185 13.5164 18.6617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4778 18.3139 13.2121 13.886 10.2216

CAGE analysis