Hb_000373_070

Information

Type -
Description -
Location Contig373: 84530-101836
Sequence    

Annotation

kegg
ID rcu:RCOM_1170470
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012066046.1
description PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067L3G3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25197 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38107: 84559-101824 , PASA_asmbl_38111: 86002-86124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_070 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
2 Hb_003151_040 0.0507908646 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
3 Hb_000215_110 0.0512119438 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_005846_040 0.051919821 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
5 Hb_001163_050 0.0524265912 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_000331_550 0.0540068235 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
7 Hb_002078_350 0.0572604638 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
8 Hb_005779_060 0.0606866382 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
9 Hb_005496_140 0.0619668551 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000146_070 0.0628512681 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
11 Hb_000152_500 0.0632961229 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
12 Hb_002046_180 0.0635490628 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
13 Hb_006059_050 0.0635726718 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
14 Hb_058999_020 0.063670671 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
15 Hb_004109_170 0.0643546267 - - PREDICTED: probable ribokinase [Jatropha curcas]
16 Hb_156279_020 0.0643936361 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_004934_100 0.0647461971 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000684_470 0.0654475489 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
19 Hb_001245_100 0.0660850019 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
20 Hb_001470_030 0.0661306876 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_070 Hb_000373_070 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_001163_050--Hb_000331_550 Hb_003125_120 Hb_003125_120 Hb_001163_050--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_008453_140 Hb_008453_140 Hb_001163_050--Hb_008453_140 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000331_550--Hb_002754_010 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_002078_350--Hb_156279_020 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34149 5.9964 6.54483 6.38451 5.96889 7.99641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.85846 11.4131 8.19061 5.67367 5.68651

CAGE analysis