Hb_002303_070

Information

Type -
Description -
Location Contig2303: 78708-85901
Sequence    

Annotation

kegg
ID rcu:RCOM_0436100
description poly-A binding protein, putative
nr
ID XP_012089901.1
description PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
swissprot
ID O74978
description Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1
trembl
ID A0A067L9C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01522 PE=4 SV=1
Gene Ontology
ID GO:0000166
description uncharacterized rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24201: 78727-85755 , PASA_asmbl_24202: 79115-79260 , PASA_asmbl_24204: 82998-83349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002303_070 0.0 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
2 Hb_000215_110 0.0493642856 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
3 Hb_003226_140 0.0523555884 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_001599_040 0.0525740398 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
5 Hb_005730_120 0.0574677235 - - PREDICTED: protein WHI4 [Jatropha curcas]
6 Hb_005357_080 0.0577632951 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
7 Hb_005271_220 0.0620407372 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
8 Hb_000039_220 0.0629286481 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
9 Hb_005291_030 0.0639175187 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
10 Hb_000345_380 0.0658954498 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
11 Hb_000403_050 0.0679511296 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
12 Hb_003125_120 0.0680802977 - - PREDICTED: TITAN-like protein [Jatropha curcas]
13 Hb_002473_130 0.0686759676 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
14 Hb_001357_350 0.0690902371 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000334_280 0.0694246618 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
16 Hb_063716_100 0.0706932854 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
17 Hb_000030_190 0.0712689789 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
18 Hb_011037_030 0.0720910019 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
19 Hb_001221_100 0.0723356501 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
20 Hb_165928_030 0.07343979 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002303_070 Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_001599_040 Hb_001599_040 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_003226_140--Hb_001599_040 Hb_003226_140--Hb_005357_080 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_000019_030 Hb_000019_030 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1594 18.584 23.8735 23.4895 21.9669 34.0223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.418 32.0729 21.5504 25.645 18.7572

CAGE analysis