Hb_004453_130

Information

Type -
Description -
Location Contig4453: 87057-91519
Sequence    

Annotation

kegg
ID rcu:RCOM_0924890
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID XP_012076609.1
description PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
swissprot
ID O14717
description tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1
trembl
ID A0A067KBL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07192 PE=3 SV=1
Gene Ontology
ID GO:0004379
description trna (cytosine -c )-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42981: 87091-88127 , PASA_asmbl_42982: 89116-89672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_130 0.0 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
2 Hb_002820_050 0.0393205093 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
3 Hb_005730_120 0.0673883966 - - PREDICTED: protein WHI4 [Jatropha curcas]
4 Hb_000049_140 0.0741518285 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
5 Hb_001599_040 0.0756175194 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
6 Hb_005271_220 0.0767945705 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_007423_040 0.0798014952 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
8 Hb_000976_120 0.0809632938 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
9 Hb_002311_180 0.0820052908 - - drought-responsive family protein [Populus trichocarpa]
10 Hb_022132_050 0.0821352757 - - GTP binding protein, putative [Ricinus communis]
11 Hb_002303_070 0.0829880272 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_002876_240 0.0850677112 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
13 Hb_014834_150 0.0851493597 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_003226_140 0.0864396612 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
15 Hb_001472_100 0.0867503527 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_007885_060 0.0880856386 - - replication factor C 40 kDa family protein [Populus trichocarpa]
17 Hb_003938_090 0.08841739 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007163_070 0.0887335954 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
19 Hb_012395_230 0.0888230788 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_003647_140 0.0900300026 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]

Gene co-expression network

sample Hb_004453_130 Hb_004453_130 Hb_002820_050 Hb_002820_050 Hb_004453_130--Hb_002820_050 Hb_005730_120 Hb_005730_120 Hb_004453_130--Hb_005730_120 Hb_000049_140 Hb_000049_140 Hb_004453_130--Hb_000049_140 Hb_001599_040 Hb_001599_040 Hb_004453_130--Hb_001599_040 Hb_005271_220 Hb_005271_220 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_002876_240 Hb_002876_240 Hb_002820_050--Hb_002876_240 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_005730_120--Hb_001599_040 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_000875_080 Hb_000875_080 Hb_000049_140--Hb_000875_080 Hb_005144_090 Hb_005144_090 Hb_000049_140--Hb_005144_090 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_011618_050 Hb_011618_050 Hb_000049_140--Hb_011618_050 Hb_000297_160 Hb_000297_160 Hb_000049_140--Hb_000297_160 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_002303_070 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54164 4.01697 7.51565 4.83261 5.6714 5.99543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.96331 7.45162 3.39241 4.83852 4.22524

CAGE analysis