Hb_011618_050

Information

Type -
Description -
Location Contig11618: 63683-71936
Sequence    

Annotation

kegg
ID rcu:RCOM_0894640
description hypothetical protein
nr
ID XP_012073303.1
description PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06240 PE=4 SV=1
Gene Ontology
ID GO:0006996
description PREDICTED: uncharacterized protein LOC105634948

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04988: 64849-68703 , PASA_asmbl_04989: 64849-72881 , PASA_asmbl_04990: 67918-68178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_050 0.0 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
2 Hb_005144_090 0.0475334975 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
3 Hb_000046_040 0.0699983152 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000649_230 0.0731445227 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
5 Hb_000751_030 0.0734677417 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
6 Hb_000049_140 0.0741965931 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
7 Hb_000245_220 0.074676011 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
8 Hb_000392_230 0.0756587987 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001188_070 0.0770189281 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
10 Hb_001501_080 0.0820961987 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
11 Hb_000297_160 0.0827965587 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
12 Hb_000260_100 0.0853660146 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000136_110 0.0854351692 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
14 Hb_001012_010 0.086545957 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
15 Hb_000236_240 0.0873990726 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
16 Hb_000317_470 0.0878907969 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
17 Hb_032986_010 0.0882241199 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
18 Hb_002013_020 0.0883352911 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
19 Hb_027380_060 0.0884895145 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
20 Hb_000058_130 0.0885071417 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]

Gene co-expression network

sample Hb_011618_050 Hb_011618_050 Hb_005144_090 Hb_005144_090 Hb_011618_050--Hb_005144_090 Hb_000046_040 Hb_000046_040 Hb_011618_050--Hb_000046_040 Hb_000649_230 Hb_000649_230 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_000049_140 Hb_000049_140 Hb_011618_050--Hb_000049_140 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_005144_090--Hb_000049_140 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_000297_160 Hb_000297_160 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040 Hb_000046_040--Hb_000649_230 Hb_010931_070 Hb_010931_070 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_001501_080 Hb_001501_080 Hb_000751_030--Hb_001501_080 Hb_000751_030--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_000875_080 Hb_000875_080 Hb_000049_140--Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_000049_140--Hb_000297_160 Hb_000331_110 Hb_000331_110 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_162286_010 Hb_162286_010 Hb_000245_220--Hb_162286_010 Hb_000035_500 Hb_000035_500 Hb_000245_220--Hb_000035_500 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61979 2.5709 8.12307 5.03457 6.70362 4.37409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31007 5.40147 3.95857 3.6241 4.25405

CAGE analysis