Hb_000414_050

Information

Type -
Description -
Location Contig414: 75839-85420
Sequence    

Annotation

kegg
ID rcu:RCOM_0660600
description translocon-associated protein, alpha subunit, putative
nr
ID KDP27583.1
description hypothetical protein JCGZ_19588 [Jatropha curcas]
swissprot
ID P45434
description Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3
trembl
ID A0A067JXN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19588 PE=4 SV=1
Gene Ontology
ID GO:0005789
description translocon-associated protein subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40992: 75834-82537 , PASA_asmbl_40993: 78278-78707 , PASA_asmbl_40995: 80345-80464
cDNA
(Sanger)
(ID:Location)		 023_L24.ab1: 77012-82537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_050 0.0 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
2 Hb_002783_170 0.0519957456 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
3 Hb_000776_100 0.0582114663 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
4 Hb_002042_030 0.067107663 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
5 Hb_000138_130 0.0683282634 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
6 Hb_002836_140 0.0710364154 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
7 Hb_000915_080 0.073540958 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_000751_030 0.0760141701 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
9 Hb_002928_010 0.0770245221 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
10 Hb_001418_040 0.0771287436 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
11 Hb_027472_120 0.0779598299 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000392_230 0.0805051719 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002311_070 0.0810388691 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
14 Hb_000101_380 0.0828478336 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
15 Hb_001301_220 0.0829258073 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
16 Hb_003038_120 0.0841651029 - - rer1 protein, putative [Ricinus communis]
17 Hb_001501_080 0.087357014 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
18 Hb_006688_050 0.0878087851 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
19 Hb_001005_030 0.0892477865 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
20 Hb_143395_010 0.0897919953 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]

Gene co-expression network

sample Hb_000414_050 Hb_000414_050 Hb_002783_170 Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_000414_050--Hb_000776_100 Hb_002042_030 Hb_002042_030 Hb_000414_050--Hb_002042_030 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_000414_050--Hb_000915_080 Hb_002783_170--Hb_000776_100 Hb_002783_170--Hb_002836_140 Hb_002783_170--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002783_170--Hb_007951_040 Hb_000101_380 Hb_000101_380 Hb_002783_170--Hb_000101_380 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000776_100--Hb_000138_130 Hb_006588_070 Hb_006588_070 Hb_000776_100--Hb_006588_070 Hb_000776_100--Hb_000101_380 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_000525_100 Hb_000525_100 Hb_000138_130--Hb_000525_100 Hb_002615_120 Hb_002615_120 Hb_000138_130--Hb_002615_120 Hb_002928_010 Hb_002928_010 Hb_000138_130--Hb_002928_010 Hb_000138_130--Hb_002042_030 Hb_002836_140--Hb_007951_040 Hb_002836_140--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_002836_140--Hb_008556_030 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000915_080--Hb_000101_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.785 47.1843 108.065 65.5846 101.051 86.9408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9369 51.1759 36.9003 53.9828 34.2089

CAGE analysis