Hb_002042_030

Information

Type -
Description -
Location Contig2042: 33306-42481
Sequence    

Annotation

kegg
ID rcu:RCOM_1431410
description Protein YIPF1, putative
nr
ID XP_012089070.1
description PREDICTED: protein YIPF1 homolog [Jatropha curcas]
swissprot
ID Q54TS4
description Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1
trembl
ID B9RF52
description Protein YIPF OS=Ricinus communis GN=RCOM_1431410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein yipf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20931: 33297-42474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_030 0.0 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
2 Hb_000414_050 0.067107663 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
3 Hb_000915_080 0.0710722972 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
4 Hb_001301_220 0.0748624489 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
5 Hb_000718_070 0.0767492253 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001418_040 0.0789732384 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
7 Hb_027472_120 0.0797298209 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002928_010 0.0809358225 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
9 Hb_003994_140 0.0814684245 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001804_110 0.082265134 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
11 Hb_000138_130 0.0827708569 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
12 Hb_001077_030 0.0831077977 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
13 Hb_000922_020 0.0831361025 - - protein binding protein, putative [Ricinus communis]
14 Hb_000959_230 0.0856634563 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_001140_030 0.0858105869 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
16 Hb_000751_030 0.0858510884 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
17 Hb_000776_100 0.0872211927 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
18 Hb_004785_100 0.0879082046 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000525_100 0.0902837269 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
20 Hb_003124_220 0.090392836 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_030 Hb_002042_030 Hb_000414_050 Hb_000414_050 Hb_002042_030--Hb_000414_050 Hb_000915_080 Hb_000915_080 Hb_002042_030--Hb_000915_080 Hb_001301_220 Hb_001301_220 Hb_002042_030--Hb_001301_220 Hb_000718_070 Hb_000718_070 Hb_002042_030--Hb_000718_070 Hb_001418_040 Hb_001418_040 Hb_002042_030--Hb_001418_040 Hb_027472_120 Hb_027472_120 Hb_002042_030--Hb_027472_120 Hb_002783_170 Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_000414_050--Hb_000776_100 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000414_050--Hb_000915_080 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000915_080--Hb_002836_140 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_000915_080--Hb_002783_170 Hb_001832_130 Hb_001832_130 Hb_001301_220--Hb_001832_130 Hb_143629_150 Hb_143629_150 Hb_001301_220--Hb_143629_150 Hb_001077_030 Hb_001077_030 Hb_001301_220--Hb_001077_030 Hb_005053_010 Hb_005053_010 Hb_001301_220--Hb_005053_010 Hb_001301_220--Hb_000718_070 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_001418_040--Hb_000101_380 Hb_001418_040--Hb_000414_050 Hb_001418_040--Hb_002836_140 Hb_002311_310 Hb_002311_310 Hb_027472_120--Hb_002311_310 Hb_004007_220 Hb_004007_220 Hb_027472_120--Hb_004007_220 Hb_001005_030 Hb_001005_030 Hb_027472_120--Hb_001005_030 Hb_001821_160 Hb_001821_160 Hb_027472_120--Hb_001821_160 Hb_150651_030 Hb_150651_030 Hb_027472_120--Hb_150651_030 Hb_027472_120--Hb_000915_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5459 19.7389 34.2954 20.3087 38.3405 25.3033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9794 17.7832 9.99832 12.4467 14.6848

CAGE analysis