Hb_000007_280

Information

Type -
Description -
Location Contig7: 263479-288654
Sequence    

Annotation

kegg
ID vvi:100268066
description importin-9
nr
ID CAN64753.1
description hypothetical protein VITISV_000066 [Vitis vinifera]
swissprot
ID Q91YE6
description Importin-9 OS=Mus musculus GN=Ipo9 PE=1 SV=3
trembl
ID A5ANW5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000066 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin beta-2 subunit family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54753: 263567-276200 , PASA_asmbl_54754: 277660-279082 , PASA_asmbl_54755: 279121-280197 , PASA_asmbl_54756: 280358-283946 , PASA_asmbl_54757: 285187-288549 , PASA_asmbl_54758: 287448-288484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_280 0.0 - - hypothetical protein VITISV_000066 [Vitis vinifera]
2 Hb_000101_380 0.053717091 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
3 Hb_003549_090 0.0614320082 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
4 Hb_000915_080 0.0628084703 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_001005_030 0.0680145759 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_011310_130 0.0713072403 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
7 Hb_010272_010 0.0718699847 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
8 Hb_000152_260 0.0726029772 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
9 Hb_058999_030 0.0749015145 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
10 Hb_000933_010 0.076305771 - - -
11 Hb_012215_010 0.0776318805 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
12 Hb_000960_050 0.0781166153 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_001269_230 0.0782250373 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
14 Hb_009296_010 0.0797175777 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
15 Hb_001025_080 0.0810860409 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
16 Hb_000776_100 0.0818531739 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
17 Hb_017700_010 0.0832126398 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
18 Hb_012053_080 0.0841102289 - - AP-2 complex subunit alpha, putative [Ricinus communis]
19 Hb_000208_210 0.0846690591 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
20 Hb_002398_030 0.0849936949 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_280 Hb_000007_280 Hb_000101_380 Hb_000101_380 Hb_000007_280--Hb_000101_380 Hb_003549_090 Hb_003549_090 Hb_000007_280--Hb_003549_090 Hb_000915_080 Hb_000915_080 Hb_000007_280--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000007_280--Hb_001005_030 Hb_011310_130 Hb_011310_130 Hb_000007_280--Hb_011310_130 Hb_010272_010 Hb_010272_010 Hb_000007_280--Hb_010272_010 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000101_380--Hb_000915_080 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_002836_140 Hb_002836_140 Hb_000915_080--Hb_002836_140 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_002783_170 Hb_002783_170 Hb_000915_080--Hb_002783_170 Hb_000414_050 Hb_000414_050 Hb_000915_080--Hb_000414_050 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_002942_050 Hb_002942_050 Hb_011310_130--Hb_002942_050 Hb_011310_130--Hb_001635_040 Hb_011310_130--Hb_000777_050 Hb_001163_120 Hb_001163_120 Hb_011310_130--Hb_001163_120 Hb_011310_130--Hb_011310_210 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35843 4.22239 5.57504 5.26347 7.07198 7.66244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43455 3.30286 2.71588 3.93124 4.09656

CAGE analysis