Hb_017700_010

Information

Type -
Description -
Location Contig17700: 13679-25181
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23290g
description POPTRDRAFT_770569; hypothetical protein
nr
ID XP_012080956.1
description PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
swissprot
ID Q500Z2
description Probable protein S-acyltransferase 15 OS=Arabidopsis thaliana GN=PAT15 PE=2 SV=1
trembl
ID B9HUI5
description S-acyltransferase OS=Populus trichocarpa GN=POPTR_0010s23290g PE=3 SV=2
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16993: 13896-25095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017700_010 0.0 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
2 Hb_058999_030 0.0650124277 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
3 Hb_001047_220 0.0651930262 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
4 Hb_003964_070 0.0695022107 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
5 Hb_000101_380 0.0711771422 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
6 Hb_000313_260 0.0722288899 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_003018_130 0.0730857327 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_002785_050 0.0746281715 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
9 Hb_004007_220 0.0750603985 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
10 Hb_007592_030 0.0752329853 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_000116_500 0.0754407111 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
12 Hb_000617_100 0.0763694928 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
13 Hb_034432_030 0.077428996 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
14 Hb_001195_560 0.0792243085 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
15 Hb_002276_170 0.0796897069 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
16 Hb_033642_030 0.0800370205 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
17 Hb_000522_170 0.0812247191 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
18 Hb_002248_110 0.0827809713 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
19 Hb_090051_030 0.0830977976 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_000208_210 0.0831302974 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]

Gene co-expression network

sample Hb_017700_010 Hb_017700_010 Hb_058999_030 Hb_058999_030 Hb_017700_010--Hb_058999_030 Hb_001047_220 Hb_001047_220 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000101_380 Hb_000101_380 Hb_017700_010--Hb_000101_380 Hb_000313_260 Hb_000313_260 Hb_017700_010--Hb_000313_260 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130 Hb_002398_030 Hb_002398_030 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_034432_030 Hb_034432_030 Hb_001047_220--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_000975_040 Hb_000975_040 Hb_001047_220--Hb_000975_040 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000915_080 Hb_000915_080 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_000737_030 Hb_000737_030 Hb_000101_380--Hb_000737_030 Hb_002276_170 Hb_002276_170 Hb_000313_260--Hb_002276_170 Hb_000116_500 Hb_000116_500 Hb_000313_260--Hb_000116_500 Hb_000313_260--Hb_034432_030 Hb_000313_260--Hb_001047_220 Hb_000313_260--Hb_001379_110 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_000574_440 Hb_000574_440 Hb_003018_130--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3049 6.45078 9.15755 11.7972 15.2346 13.0211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6157 7.50612 8.92386 8.27448 7.26007

CAGE analysis