Hb_000313_260

Information

Type -
Description -
Location Contig313: 358951-360306
Sequence    

Annotation

kegg
ID rcu:RCOM_1090900
description auxin:hydrogen symporter, putative
nr
ID XP_002526597.1
description auxin:hydrogen symporter, putative [Ricinus communis]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID B9SKS8
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_1090900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33148: 358867-360972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_260 0.0 - - auxin:hydrogen symporter, putative [Ricinus communis]
2 Hb_002276_170 0.0560813329 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
3 Hb_000116_500 0.0709113838 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
4 Hb_017700_010 0.0722288899 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
5 Hb_034432_030 0.0740996925 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
6 Hb_001047_220 0.0823435352 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
7 Hb_001379_110 0.0844447858 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
8 Hb_003018_130 0.0863855771 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
9 Hb_005211_100 0.0864232315 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
10 Hb_004117_100 0.0873540069 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
11 Hb_011618_080 0.0874818233 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_003375_070 0.0887196774 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
13 Hb_001632_040 0.0890099781 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
14 Hb_007426_150 0.0927304627 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
15 Hb_004414_060 0.0927829456 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
16 Hb_000544_010 0.0934168019 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
17 Hb_001493_030 0.0940613585 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
18 Hb_002811_060 0.0943396679 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
19 Hb_001444_010 0.0957416964 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
20 Hb_032202_200 0.0969096709 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000313_260 Hb_000313_260 Hb_002276_170 Hb_002276_170 Hb_000313_260--Hb_002276_170 Hb_000116_500 Hb_000116_500 Hb_000313_260--Hb_000116_500 Hb_017700_010 Hb_017700_010 Hb_000313_260--Hb_017700_010 Hb_034432_030 Hb_034432_030 Hb_000313_260--Hb_034432_030 Hb_001047_220 Hb_001047_220 Hb_000313_260--Hb_001047_220 Hb_001379_110 Hb_001379_110 Hb_000313_260--Hb_001379_110 Hb_000915_260 Hb_000915_260 Hb_002276_170--Hb_000915_260 Hb_002276_170--Hb_001047_220 Hb_000317_470 Hb_000317_470 Hb_002276_170--Hb_000317_470 Hb_001632_040 Hb_001632_040 Hb_002276_170--Hb_001632_040 Hb_004414_060 Hb_004414_060 Hb_002276_170--Hb_004414_060 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_058999_030 Hb_058999_030 Hb_017700_010--Hb_058999_030 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000101_380 Hb_000101_380 Hb_017700_010--Hb_000101_380 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130 Hb_034432_030--Hb_001379_110 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_011618_080 Hb_011618_080 Hb_034432_030--Hb_011618_080 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_001047_220--Hb_000975_040 Hb_001379_110--Hb_000975_040 Hb_001379_110--Hb_000958_140 Hb_001379_110--Hb_000544_010 Hb_027380_140 Hb_027380_140 Hb_001379_110--Hb_027380_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9818 14.585 20.5322 25.9184 51.0233 34.6439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4155 16.8757 30.3352 23.6611 24.2744

CAGE analysis