Hb_138596_010

Information

Type -
Description -
Location Contig138596: 7759-11799
Sequence    

Annotation

kegg
ID rcu:RCOM_1463010
description transcription regulator, putative
nr
ID XP_012066571.1
description PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
swissprot
ID Q9SKH2
description BTB/POZ domain-containing protein At2g13690 OS=Arabidopsis thaliana GN=PRL1-IFG PE=2 SV=2
trembl
ID A0A067L2A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10571: 7786-11754
cDNA
(Sanger)
(ID:Location)		 012_L11.ab1: 8055-8837 , 041_H23.ab1: 8289-8840 , 045_L21.ab1: 10976-11754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138596_010 0.0 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
2 Hb_002267_140 0.0555505684 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
3 Hb_008695_110 0.0581061787 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
4 Hb_005993_050 0.0586721271 - - Protein AFR, putative [Ricinus communis]
5 Hb_000479_220 0.0603216378 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
6 Hb_002843_120 0.0605859609 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
7 Hb_000343_250 0.0622720827 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_001047_220 0.0632028743 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
9 Hb_002078_110 0.0639793061 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
10 Hb_000958_140 0.0640459506 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
11 Hb_001635_040 0.0654263702 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
12 Hb_000866_460 0.0675026556 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
13 Hb_014361_070 0.0682821527 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
14 Hb_000084_250 0.0695920817 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_000309_040 0.070504925 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
16 Hb_000975_040 0.0717394549 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
17 Hb_003785_040 0.072117329 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
18 Hb_004097_070 0.0724340298 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
19 Hb_002615_090 0.0727598454 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_002732_040 0.0731498634 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_138596_010 Hb_138596_010 Hb_002267_140 Hb_002267_140 Hb_138596_010--Hb_002267_140 Hb_008695_110 Hb_008695_110 Hb_138596_010--Hb_008695_110 Hb_005993_050 Hb_005993_050 Hb_138596_010--Hb_005993_050 Hb_000479_220 Hb_000479_220 Hb_138596_010--Hb_000479_220 Hb_002843_120 Hb_002843_120 Hb_138596_010--Hb_002843_120 Hb_000343_250 Hb_000343_250 Hb_138596_010--Hb_000343_250 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002267_140--Hb_002843_120 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230 Hb_000479_220--Hb_008253_030 Hb_000070_080 Hb_000070_080 Hb_000479_220--Hb_000070_080 Hb_002615_090 Hb_002615_090 Hb_000479_220--Hb_002615_090 Hb_000479_220--Hb_002253_080 Hb_000479_220--Hb_002843_120 Hb_000603_280 Hb_000603_280 Hb_002843_120--Hb_000603_280 Hb_000077_140 Hb_000077_140 Hb_002843_120--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_002843_120--Hb_003504_030 Hb_013399_100 Hb_013399_100 Hb_002843_120--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8571 41.3759 33.2783 29.2094 41.4974 40.6306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1081 24.7681 33.633 21.9005 31.649

CAGE analysis