Hb_001767_140

Information

Type -
Description -
Location Contig1767: 136169-143063
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21780g
description POPTRDRAFT_227650; hypothetical protein
nr
ID XP_012072942.1
description PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
swissprot
ID Q9C5S1
description Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1
trembl
ID A0A067KMP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08408 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein-tyrosine-phosphatase mkp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16965: 136278-143037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_140 0.0 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
2 Hb_008253_030 0.0406992877 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
3 Hb_002253_080 0.0466438063 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
4 Hb_002267_140 0.0527616533 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
5 Hb_140049_040 0.0531974985 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
6 Hb_000174_060 0.0535393605 - - zinc finger family protein [Populus trichocarpa]
7 Hb_003866_080 0.055278044 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
8 Hb_002276_240 0.0573741659 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
9 Hb_002615_090 0.0600981284 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
10 Hb_001147_110 0.0605042247 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
11 Hb_002085_030 0.0605233672 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
12 Hb_004129_070 0.0609025764 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
13 Hb_009615_170 0.0610323901 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000170_150 0.0612058792 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
15 Hb_012194_030 0.0622536725 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
16 Hb_000914_120 0.0629475612 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
17 Hb_003633_070 0.0647216802 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
18 Hb_000230_090 0.0655310549 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
19 Hb_001089_050 0.0660501987 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
20 Hb_000264_030 0.0663721814 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001767_140 Hb_001767_140 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_008253_030--Hb_002253_080 Hb_008253_030--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_008253_030--Hb_001147_110 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_002276_240 Hb_002276_240 Hb_008253_030--Hb_002276_240 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002267_140--Hb_002276_240 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_001089_050 Hb_001089_050 Hb_003866_080--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_003866_080--Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_003866_080--Hb_004143_100 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4461 15.0935 8.91127 7.58397 9.50401 12.0997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21355 6.16754 7.50383 8.60426 8.05454

CAGE analysis