Hb_140049_040

Information

Type -
Description -
Location Contig140049: 13276-24985
Sequence    

Annotation

kegg
ID rcu:RCOM_0911730
description hypothetical protein
nr
ID XP_012069668.1
description PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
swissprot
ID Q91V83
description TELO2-interacting protein 1 homolog OS=Mus musculus GN=Tti1 PE=1 SV=2
trembl
ID B9RTN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10898: 13668-16475 , PASA_asmbl_10899: 15741-18759 , PASA_asmbl_10900: 15439-15675 , PASA_asmbl_10901: 16272-16451 , PASA_asmbl_10902: 15749-16446 , PASA_asmbl_10903: 18895-19137 , PASA_asmbl_10904: 19194-21361 , PASA_asmbl_10906: 23564-23928 , PASA_asmbl_10907: 23057-24722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140049_040 0.0 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
2 Hb_000174_060 0.0495738648 - - zinc finger family protein [Populus trichocarpa]
3 Hb_000289_040 0.0510996601 - - Poly(A) polymerase alpha, putative [Ricinus communis]
4 Hb_001767_140 0.0531974985 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
5 Hb_002876_130 0.0559086767 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
6 Hb_000230_090 0.0588479821 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
7 Hb_001277_020 0.0593794042 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
8 Hb_012305_030 0.0611212973 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
9 Hb_004129_070 0.0613629454 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
10 Hb_003927_040 0.0618111666 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_002325_040 0.0618952946 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
12 Hb_000640_310 0.0622557526 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
13 Hb_012194_030 0.0624907046 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
14 Hb_004976_010 0.0635118215 - - hypothetical protein RCOM_1429110 [Ricinus communis]
15 Hb_003866_080 0.0637516789 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
16 Hb_000648_080 0.0638954792 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_000264_030 0.0640668462 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
18 Hb_008103_060 0.0641996277 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
19 Hb_000556_170 0.0646379193 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
20 Hb_000914_120 0.0648129022 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_140049_040 Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_000289_040--Hb_002876_130 Hb_014361_070 Hb_014361_070 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_000236_470 Hb_000236_470 Hb_001277_020--Hb_000236_470 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.65517 9.89291 6.17157 5.02406 7.78494 6.75205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76321 4.96923 3.87705 5.93437 5.3052

CAGE analysis