Hb_000960_050

Information

Type -
Description -
Location Contig960: 27418-43178
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07900g
description POPTRDRAFT_780400; exportin1 family protein
nr
ID XP_012090921.1
description PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
swissprot
ID Q9SMV6
description Protein EXPORTIN 1A OS=Arabidopsis thaliana GN=XPO1 PE=1 SV=1
trembl
ID A0A067JG87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00570 PE=4 SV=1
Gene Ontology
ID GO:0008536
description exportin 1a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63708: 27416-43120 , PASA_asmbl_63709: 28014-28186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_050 0.0 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
2 Hb_000230_090 0.0410232246 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
3 Hb_008112_030 0.0527851351 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009112_010 0.0605599622 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
5 Hb_000406_230 0.060728959 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
6 Hb_000914_120 0.0649697382 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
7 Hb_000174_060 0.0662240316 - - zinc finger family protein [Populus trichocarpa]
8 Hb_000261_030 0.0666364896 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
9 Hb_000917_160 0.0689872943 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
10 Hb_000162_280 0.0690277031 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
11 Hb_000679_340 0.0696431521 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
12 Hb_001021_200 0.070124231 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
13 Hb_160459_040 0.0702400783 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
14 Hb_000896_080 0.0719822829 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
15 Hb_000191_130 0.0719949752 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
16 Hb_004453_110 0.0722423649 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
17 Hb_002174_020 0.0723021632 - - ring finger protein, putative [Ricinus communis]
18 Hb_003638_090 0.0725615987 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
19 Hb_001307_080 0.0738516767 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
20 Hb_003633_070 0.0739440069 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]

Gene co-expression network

sample Hb_000960_050 Hb_000960_050 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_008112_030 Hb_008112_030 Hb_000960_050--Hb_008112_030 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000406_230 Hb_000406_230 Hb_000960_050--Hb_000406_230 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_002174_020 Hb_002174_020 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_000162_280 Hb_000162_280 Hb_009112_010--Hb_000162_280 Hb_003633_070 Hb_003633_070 Hb_009112_010--Hb_003633_070 Hb_004629_010 Hb_004629_010 Hb_009112_010--Hb_004629_010 Hb_009112_010--Hb_008112_030 Hb_006615_120 Hb_006615_120 Hb_009112_010--Hb_006615_120 Hb_023344_010 Hb_023344_010 Hb_000406_230--Hb_023344_010 Hb_007558_070 Hb_007558_070 Hb_000406_230--Hb_007558_070 Hb_000010_360 Hb_000010_360 Hb_000406_230--Hb_000010_360 Hb_000191_130 Hb_000191_130 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000914_120--Hb_008695_110 Hb_000671_070 Hb_000671_070 Hb_000914_120--Hb_000671_070 Hb_001268_280 Hb_001268_280 Hb_000914_120--Hb_001268_280 Hb_000264_030 Hb_000264_030 Hb_000914_120--Hb_000264_030 Hb_001767_140 Hb_001767_140 Hb_000914_120--Hb_001767_140 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5994 19.3514 15.3378 11.7215 20.6216 21.5164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.86272 7.82114 7.80515 13.2301 10.857

CAGE analysis