Hb_007558_070

Information

Type -
Description -
Location Contig7558: 41664-53238
Sequence    

Annotation

kegg
ID rcu:RCOM_0542310
description Pre-mRNA-processing protein prp39, putative
nr
ID XP_012085231.1
description PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
swissprot
ID Q4KLU2
description Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
trembl
ID A0A067JUH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17626 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pre-mrna-processing factor 39 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57028: 41847-53220 , PASA_asmbl_57029: 47107-53220 , PASA_asmbl_57030: 47293-48589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007558_070 0.0 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
2 Hb_000406_230 0.0523972597 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
3 Hb_000191_130 0.0609480808 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_023344_010 0.0640617256 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
5 Hb_000398_020 0.0658187721 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
6 Hb_000917_160 0.0670939616 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
7 Hb_000010_360 0.0699212205 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
8 Hb_000640_310 0.0725469547 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
9 Hb_000648_080 0.0754362627 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
10 Hb_000062_470 0.0778233482 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
11 Hb_004453_110 0.0799417357 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
12 Hb_000856_140 0.0800435294 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
13 Hb_001307_080 0.0804096698 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_001959_020 0.0823256218 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
15 Hb_004429_160 0.0836138842 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_154114_010 0.0843904805 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
17 Hb_104061_020 0.0844078197 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
18 Hb_000740_100 0.0851292313 - - calpain, putative [Ricinus communis]
19 Hb_001191_120 0.085839517 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_144831_010 0.0862621664 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007558_070 Hb_007558_070 Hb_000406_230 Hb_000406_230 Hb_007558_070--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_007558_070--Hb_000191_130 Hb_023344_010 Hb_023344_010 Hb_007558_070--Hb_023344_010 Hb_000398_020 Hb_000398_020 Hb_007558_070--Hb_000398_020 Hb_000917_160 Hb_000917_160 Hb_007558_070--Hb_000917_160 Hb_000010_360 Hb_000010_360 Hb_007558_070--Hb_000010_360 Hb_000406_230--Hb_023344_010 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000406_230--Hb_000917_160 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_023344_010--Hb_000640_310 Hb_023344_010--Hb_000010_360 Hb_023344_010--Hb_000191_130 Hb_001799_050 Hb_001799_050 Hb_023344_010--Hb_001799_050 Hb_000648_080 Hb_000648_080 Hb_000398_020--Hb_000648_080 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_000917_160--Hb_000062_470 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9839 31.8543 18.0064 14.7725 37.8669 23.8874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0543 12.4901 8.37672 24.8697 20.027

CAGE analysis