Hb_000062_470

Information

Type -
Description -
Location Contig62: 340890-347394
Sequence    

Annotation

kegg
ID rcu:RCOM_1081710
description cdk10/11, putative (EC:2.7.11.23)
nr
ID XP_012085616.1
description PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
swissprot
ID Q7XUF4
description Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2
trembl
ID A0A067JS44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17914 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cyclin-dependent kinase g-2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51466: 345903-346424 , PASA_asmbl_51469: 331189-344766 , PASA_asmbl_51471: 343852-347894 , PASA_asmbl_51472: 343852-347901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_470 0.0 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
2 Hb_000191_130 0.0421529316 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
3 Hb_000917_160 0.0458017423 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
4 Hb_010417_060 0.0528556102 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
5 Hb_000661_200 0.0632812982 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
6 Hb_004429_160 0.0650432236 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
7 Hb_007813_030 0.0680492116 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
8 Hb_118840_050 0.0703634311 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
9 Hb_003040_020 0.076829704 - - PREDICTED: protein cereblon [Jatropha curcas]
10 Hb_007558_070 0.0778233482 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
11 Hb_032920_130 0.0809141094 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
12 Hb_000032_010 0.0821981023 - - crooked neck protein, putative [Ricinus communis]
13 Hb_001021_200 0.0827216201 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
14 Hb_003858_090 0.0857976478 - - Filamin-A-interacting protein, putative [Ricinus communis]
15 Hb_000010_360 0.0867891781 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
16 Hb_001231_030 0.0870878304 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_000406_230 0.0873365497 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
18 Hb_000577_030 0.0879557055 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
19 Hb_001221_160 0.0884181543 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000544_060 0.088791003 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_470 Hb_000062_470 Hb_000191_130 Hb_000191_130 Hb_000062_470--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_000191_130--Hb_000917_160 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_000917_160--Hb_010417_060 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_002044_170 Hb_002044_170 Hb_010417_060--Hb_002044_170 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_052764_060 Hb_052764_060 Hb_000661_200--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_000661_200--Hb_007813_030 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_000197_290 Hb_000197_290 Hb_007813_030--Hb_000197_290 Hb_000574_510 Hb_000574_510 Hb_007813_030--Hb_000574_510 Hb_007813_030--Hb_052764_060 Hb_005104_010 Hb_005104_010 Hb_007813_030--Hb_005104_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5745 21.6132 10.158 9.50384 21.3006 13.9342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.26091 4.55681 4.37001 10.7889 10.3804

CAGE analysis