Hb_032920_130

Information

Type -
Description -
Location Contig32920: 164921-173610
Sequence    

Annotation

kegg
ID rcu:RCOM_0175340
description zinc finger protein, putative
nr
ID XP_012093114.1
description PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
swissprot
ID O80977
description Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1
trembl
ID A0A067L7U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16320 PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34631: 165011-173410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_130 0.0 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
2 Hb_010417_060 0.0619038231 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
3 Hb_000261_030 0.0629722646 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
4 Hb_002044_170 0.0653182797 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
5 Hb_000035_410 0.0661506301 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_006787_060 0.068357284 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
7 Hb_001235_230 0.070999332 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
8 Hb_000577_030 0.0713477214 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
9 Hb_000176_130 0.0728631083 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
10 Hb_002392_030 0.073127941 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
11 Hb_001021_200 0.0731519235 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
12 Hb_004629_010 0.0742894465 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
13 Hb_000917_160 0.0756759564 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
14 Hb_006618_090 0.0757784009 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
15 Hb_000960_050 0.0775039231 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_158604_010 0.0785495422 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
17 Hb_089140_050 0.0790721058 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
18 Hb_000062_470 0.0809141094 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
19 Hb_001638_300 0.0827076759 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
20 Hb_002022_070 0.0836215849 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_032920_130 Hb_032920_130 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_000062_470 Hb_000062_470 Hb_010417_060--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130 Hb_002044_170--Hb_000035_410 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_001231_030 Hb_001231_030 Hb_006787_060--Hb_001231_030 Hb_004629_010 Hb_004629_010 Hb_006787_060--Hb_004629_010 Hb_133047_010 Hb_133047_010 Hb_006787_060--Hb_133047_010 Hb_000935_090 Hb_000935_090 Hb_006787_060--Hb_000935_090 Hb_002022_070 Hb_002022_070 Hb_006787_060--Hb_002022_070 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_001235_230--Hb_000176_130 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.4864 100.104 68.4267 61.3394 120.69 97.8851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4544 20.1002 44.5418 63.4597 68.7858

CAGE analysis