Hb_000176_130

Information

Type -
Description -
Location Contig176: 363719-366757
Sequence    

Annotation

kegg
ID vvi:100242352
description probable splicing factor 3A subunit 1
nr
ID XP_012065792.1
description PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
swissprot
ID Q8RXF1
description Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2
trembl
ID A0A067L4F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24198 PE=4 SV=1
Gene Ontology
ID GO:0003723
description probable splicing factor 3a subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16871: 363022-367209 , PASA_asmbl_16872: 365946-366657
cDNA
(Sanger)
(ID:Location)		 038_D12.ab1: 363038-364575

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000176_130 0.0 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
2 Hb_003124_160 0.0544202679 - - dynamin, putative [Ricinus communis]
3 Hb_001235_230 0.0561870962 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
4 Hb_011202_020 0.0665486404 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
5 Hb_000261_030 0.0691565187 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
6 Hb_002044_170 0.0698121978 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
7 Hb_001401_060 0.071229901 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
8 Hb_032920_130 0.0728631083 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
9 Hb_005214_150 0.0756243151 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
10 Hb_000035_410 0.0757495856 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
11 Hb_000949_010 0.0777224325 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
12 Hb_000086_690 0.0787560777 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
13 Hb_005357_260 0.0806902914 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
14 Hb_001989_050 0.0817888216 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
15 Hb_002375_110 0.083512094 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
16 Hb_006787_060 0.0847951344 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
17 Hb_001488_270 0.0852671244 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_010417_060 0.0853544538 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
19 Hb_004429_010 0.0861790809 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_000183_050 0.0862532422 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000176_130 Hb_000176_130 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_001235_230 Hb_001235_230 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_002044_170 Hb_002044_170 Hb_000176_130--Hb_002044_170 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_003124_160--Hb_000261_030 Hb_001235_230--Hb_011202_020 Hb_001235_230--Hb_000261_030 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_011202_020--Hb_005402_040 Hb_011202_020--Hb_005357_260 Hb_011202_020--Hb_000261_030 Hb_009486_170 Hb_009486_170 Hb_011202_020--Hb_009486_170 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000035_410 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001401_060--Hb_001235_230 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_000406_020 Hb_000406_020 Hb_001401_060--Hb_000406_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.9423 85.6765 38.7489 53.8794 66.7174 69.1088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2236 13.6798 27.8913 54.5934 57.419

CAGE analysis