Hb_030627_060

Information

Type -
Description -
Location Contig30627: 77218-83617
Sequence    

Annotation

kegg
ID tcc:TCM_041938
description Endoplasmic reticulum [ER]-type calcium ATPase isoform 1
nr
ID XP_012064944.1
description PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
swissprot
ID Q9XES1
description Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2
trembl
ID A0A067LAC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05630 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase endoplasmic reticulum-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32377: 77079-83551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030627_060 0.0 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
2 Hb_002044_170 0.0621664691 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
3 Hb_000446_120 0.0630761251 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
4 Hb_005731_090 0.0684243723 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
5 Hb_002329_040 0.0695112179 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
6 Hb_148909_030 0.0723656303 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
7 Hb_001235_230 0.0727929508 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
8 Hb_002400_240 0.0745247451 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_003044_020 0.0745834793 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
10 Hb_005701_070 0.0747245268 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
11 Hb_000261_030 0.0759466519 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
12 Hb_000035_410 0.0772493374 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
13 Hb_111985_080 0.0775934306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
14 Hb_002301_080 0.0778588501 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
15 Hb_000160_290 0.0787480557 - - unnamed protein product [Vitis vinifera]
16 Hb_004453_110 0.0792304285 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
17 Hb_000740_100 0.079285152 - - calpain, putative [Ricinus communis]
18 Hb_001366_210 0.0810752766 - - cathepsin B, putative [Ricinus communis]
19 Hb_116929_010 0.0819089369 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
20 Hb_133047_010 0.0820004054 - - xanthine dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_030627_060 Hb_030627_060 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_002044_170--Hb_001235_230 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_000261_030 Hb_000261_030 Hb_002044_170--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_002044_170--Hb_000176_130 Hb_000035_410 Hb_000035_410 Hb_002044_170--Hb_000035_410 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_002784_110 Hb_002784_110 Hb_000446_120--Hb_002784_110 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_025194_040 Hb_025194_040 Hb_000446_120--Hb_025194_040 Hb_002174_020 Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_004453_110 Hb_004453_110 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_001235_230--Hb_000261_030 Hb_001235_230--Hb_000176_130 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_001235_230--Hb_000035_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.2011 78.2032 29.4019 53.3869 106.551 94.6777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.1763 18.9618 41.3032 65.7251 60.6113

CAGE analysis