Hb_002784_110

Information

Type -
Description -
Location Contig2784: 110461-123175
Sequence    

Annotation

kegg
ID rcu:RCOM_1452000
description ankyrin-repeat containing protein, putative (EC:3.1.1.4)
nr
ID XP_012068697.1
description PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID A0A067L7R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24549 PE=4 SV=1
Gene Ontology
ID GO:0005802
description e3 ubiquitin-protein ligase keg isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29093: 110333-110522 , PASA_asmbl_29094: 110560-123107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_110 0.0 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
2 Hb_000446_120 0.0578463765 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
3 Hb_025194_040 0.0618807826 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
4 Hb_001913_060 0.0632853212 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
5 Hb_000788_070 0.0634618416 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
6 Hb_000035_290 0.0647028884 - - RNA recognition motif-containing family protein [Populus trichocarpa]
7 Hb_000183_020 0.0679073631 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
8 Hb_001821_090 0.0686838779 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
9 Hb_000395_070 0.0687137943 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
10 Hb_000740_100 0.0702106191 - - calpain, putative [Ricinus communis]
11 Hb_011173_030 0.0712154156 - - pumilio, putative [Ricinus communis]
12 Hb_001268_350 0.0713390789 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
13 Hb_002329_040 0.0720914235 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_002107_070 0.07225336 - - hypothetical protein RCOM_1598630 [Ricinus communis]
15 Hb_005496_110 0.0723680554 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
16 Hb_000412_010 0.0740333895 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000579_230 0.0753710137 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
18 Hb_001550_060 0.0758430076 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
19 Hb_000406_020 0.0768585281 - - -
20 Hb_005701_070 0.0768790662 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]

Gene co-expression network

sample Hb_002784_110 Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_030627_060 Hb_030627_060 Hb_000446_120--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_000446_120--Hb_025194_040 Hb_025194_040--Hb_000035_290 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_001913_060--Hb_000446_120 Hb_001913_060--Hb_002329_040 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000025_710 Hb_000025_710 Hb_000788_070--Hb_000025_710 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_000035_290--Hb_000166_130 Hb_000035_290--Hb_000343_120 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_000183_020--Hb_002329_040 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1459 35.6659 10.6684 15.8225 31.5903 33.0548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9025 13.0101 21.11 31.3106 30.2947

CAGE analysis