Hb_000446_120

Information

Type -
Description -
Location Contig446: 172630-184007
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03270g
description KOW domain-containing transcription factor family protein
nr
ID XP_012080988.1
description PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
swissprot
ID Q9STN3
description Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
trembl
ID A0A067KF58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16173 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43017: 172629-172948 , PASA_asmbl_43018: 179526-181175 , PASA_asmbl_43019: 182183-183161 , PASA_asmbl_43020: 183340-183742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_120 0.0 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
2 Hb_005701_070 0.0531952519 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
3 Hb_002784_110 0.0578463765 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
4 Hb_030627_060 0.0630761251 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
5 Hb_002329_040 0.0723343101 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
6 Hb_000740_100 0.0731729634 - - calpain, putative [Ricinus communis]
7 Hb_025194_040 0.0738843264 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
8 Hb_000183_020 0.0754348509 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_001913_060 0.0755435186 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_116929_010 0.0775154653 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
11 Hb_000406_020 0.0794788584 - - -
12 Hb_002400_240 0.0818086309 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
13 Hb_002974_060 0.0822887644 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
14 Hb_011173_030 0.0823827097 - - pumilio, putative [Ricinus communis]
15 Hb_000395_070 0.0830454624 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
16 Hb_003044_020 0.0869492063 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_008024_030 0.0876597995 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
18 Hb_002107_070 0.0881096949 - - hypothetical protein RCOM_1598630 [Ricinus communis]
19 Hb_001235_230 0.0886900902 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
20 Hb_009476_040 0.0887700889 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000446_120 Hb_000446_120 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_002784_110 Hb_002784_110 Hb_000446_120--Hb_002784_110 Hb_030627_060 Hb_030627_060 Hb_000446_120--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_025194_040 Hb_025194_040 Hb_000446_120--Hb_025194_040 Hb_005701_070--Hb_030627_060 Hb_002400_240 Hb_002400_240 Hb_005701_070--Hb_002400_240 Hb_005701_070--Hb_002784_110 Hb_000406_020 Hb_000406_020 Hb_005701_070--Hb_000406_020 Hb_005701_070--Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_002329_040--Hb_000183_020 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020 Hb_025194_040--Hb_000035_290 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42908 9.81219 2.95631 6.33779 12.6476 12.0158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23233 3.29935 6.38035 10.0567 10.3951

CAGE analysis