Hb_148909_030

Information

Type -
Description -
Location Contig148909: 32415-43677
Sequence    

Annotation

kegg
ID rcu:RCOM_0799020
description hypothetical protein
nr
ID XP_012077344.1
description PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
swissprot
ID O88480
description Calcineurin-binding protein cabin-1 OS=Rattus norvegicus GN=Cabin1 PE=1 SV=1
trembl
ID A0A067KDD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07713 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12381: 33239-38736 , PASA_asmbl_12382: 32456-33724 , PASA_asmbl_12383: 37394-38736 , PASA_asmbl_12385: 41178-42512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148909_030 0.0 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
2 Hb_005488_150 0.0569662974 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_116929_010 0.0656802599 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
4 Hb_111985_080 0.0691024678 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
5 Hb_133047_010 0.0692228499 - - xanthine dehydrogenase, putative [Ricinus communis]
6 Hb_002392_030 0.0697223407 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
7 Hb_000010_360 0.0698704429 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
8 Hb_000856_140 0.0702297936 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
9 Hb_002301_080 0.0712208764 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
10 Hb_000740_100 0.0714859725 - - calpain, putative [Ricinus communis]
11 Hb_004884_010 0.0723481469 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
12 Hb_030627_060 0.0723656303 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
13 Hb_004453_110 0.0730072402 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
14 Hb_002329_040 0.0731324834 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_000261_030 0.074350836 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
16 Hb_028487_010 0.0754365483 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
17 Hb_002422_050 0.0764527211 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
18 Hb_003739_030 0.0768829896 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
19 Hb_001493_040 0.0775260811 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
20 Hb_174821_010 0.0780534347 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_148909_030 Hb_148909_030 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_000069_320 Hb_000069_320 Hb_005488_150--Hb_000069_320 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_002301_080 Hb_002301_080 Hb_116929_010--Hb_002301_080 Hb_002400_240 Hb_002400_240 Hb_116929_010--Hb_002400_240 Hb_003044_020 Hb_003044_020 Hb_116929_010--Hb_003044_020 Hb_116929_010--Hb_000183_020 Hb_003623_030 Hb_003623_030 Hb_116929_010--Hb_003623_030 Hb_111985_080--Hb_133047_010 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_064903_010 Hb_064903_010 Hb_111985_080--Hb_064903_010 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_133047_010--Hb_002392_030 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_133047_010--Hb_002301_080 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_004629_010 Hb_004629_010 Hb_002392_030--Hb_004629_010 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9487 12.5826 6.63647 5.28015 16.7522 14.9029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29401 4.42262 6.97957 11.4464 9.73266

CAGE analysis