Hb_064903_010

Information

Type -
Description -
Location Contig64903: 5773-7374
Sequence    

Annotation

kegg
ID rcu:RCOM_1397250
description chaperonin containing t-complex protein 1, delta subunit, tcpd, putative
nr
ID XP_012080304.1
description PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
swissprot
ID Q9LV21
description T-complex protein 1 subunit delta OS=Arabidopsis thaliana GN=CCT4 PE=1 SV=1
trembl
ID A0A067LHX6
description T-complex protein 1 subunit delta OS=Jatropha curcas GN=JCGZ_02434 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52514: 5459-7552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064903_010 0.0 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
2 Hb_000768_190 0.0664858511 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_111985_080 0.0811792398 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
4 Hb_002301_080 0.0834351176 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
5 Hb_003847_120 0.0877630115 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000832_130 0.0883593116 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
7 Hb_003044_020 0.0883870656 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
8 Hb_030627_060 0.0908038646 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
9 Hb_005488_150 0.0916285362 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_133047_010 0.0931722414 - - xanthine dehydrogenase, putative [Ricinus communis]
11 Hb_002233_100 0.0933617601 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
12 Hb_004228_010 0.0953681764 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
13 Hb_004718_010 0.0963510713 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
14 Hb_002471_210 0.0966935936 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
15 Hb_002232_030 0.0971261717 - - Pinin, putative [Ricinus communis]
16 Hb_003544_100 0.0974241319 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_000951_110 0.0977754004 - - heat shock protein, putative [Ricinus communis]
18 Hb_148909_030 0.097914146 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
19 Hb_002400_240 0.0992597038 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
20 Hb_116929_010 0.099351073 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_064903_010 Hb_064903_010 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_133047_010 Hb_133047_010 Hb_111985_080--Hb_133047_010 Hb_148909_030 Hb_148909_030 Hb_111985_080--Hb_148909_030 Hb_111985_080--Hb_002301_080 Hb_030627_060 Hb_030627_060 Hb_111985_080--Hb_030627_060 Hb_004718_010 Hb_004718_010 Hb_111985_080--Hb_004718_010 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_002301_080--Hb_133047_010 Hb_002400_240 Hb_002400_240 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_000951_110 Hb_000951_110 Hb_000832_130--Hb_000951_110 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_000832_130--Hb_111985_080 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.8973 49.9747 19.2807 27.2114 86.9139 76.0167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.159 16.8842 40.8538 29.2974 48.5599

CAGE analysis