Hb_117552_010

Information

Type -
Description -
Location Contig117552: 3401-6581
Sequence    

Annotation

kegg
ID rcu:RCOM_1594730
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002510403.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8LEZ4
description Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1
trembl
ID B9R7W0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1594730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05348: 3001-6534 , PASA_asmbl_05349: 3067-6556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117552_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003656_180 0.059899096 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
3 Hb_002301_080 0.0681426991 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
4 Hb_002235_160 0.069278627 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
5 Hb_001493_040 0.0701578292 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
6 Hb_002400_240 0.0750503219 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_000922_370 0.0765701054 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
8 Hb_000785_040 0.078075644 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
9 Hb_000832_220 0.078881288 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
10 Hb_116929_010 0.0791988082 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
11 Hb_003044_020 0.0819477007 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
12 Hb_000160_290 0.0830300967 - - unnamed protein product [Vitis vinifera]
13 Hb_032631_040 0.0840497471 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
14 Hb_001322_210 0.085935205 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
15 Hb_000183_020 0.0867746481 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_001472_090 0.0868455154 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_007062_020 0.0870291153 - - gcn4-complementing protein, putative [Ricinus communis]
18 Hb_015099_010 0.0870310007 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
19 Hb_005321_020 0.0878587167 - - splicing factor-related family protein [Populus trichocarpa]
20 Hb_027380_140 0.0893855461 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_117552_010 Hb_117552_010 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003884_030 Hb_003884_030 Hb_003656_180--Hb_003884_030 Hb_000785_040 Hb_000785_040 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_133047_010 Hb_133047_010 Hb_002301_080--Hb_133047_010 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_000160_290 Hb_000160_290 Hb_002235_160--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_001235_200 Hb_001235_200 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_147737_010 Hb_147737_010 Hb_002235_160--Hb_147737_010 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_034243_020 Hb_034243_020 Hb_001493_040--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_001493_040--Hb_010315_090 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_002400_240--Hb_116929_010 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000922_370--Hb_000160_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.2794 40.2687 16.7304 25.1987 42.0332 63.8645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5832 11.5557 26.9748 30.0587 35.1421

CAGE analysis