Hb_002235_160

Information

Type -
Description -
Location Contig2235: 93789-97576
Sequence    

Annotation

kegg
ID cic:CICLE_v100116001m
description hypothetical protein
nr
ID XP_012084751.1
description PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
swissprot
ID Q38997
description SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2
trembl
ID A0A067K4L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19884 PE=4 SV=1
Gene Ontology
ID GO:0000152
description snf1-related protein kinase catalytic subunit alpha kin10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23214: 93802-110645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_160 0.0 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
2 Hb_000160_290 0.0603676783 - - unnamed protein product [Vitis vinifera]
3 Hb_000796_190 0.0689618501 - - hypothetical protein F383_31148 [Gossypium arboreum]
4 Hb_117552_010 0.069278627 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001235_200 0.0714548274 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003124_130 0.0719012539 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_147737_010 0.0719929888 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
8 Hb_001493_040 0.0724232942 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
9 Hb_000567_010 0.0725664649 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
10 Hb_000023_190 0.0727896889 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
11 Hb_010193_050 0.0728993026 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007307_020 0.0738722753 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002078_100 0.074099987 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
14 Hb_000531_090 0.0748222687 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
15 Hb_001454_320 0.075658088 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
16 Hb_000567_050 0.0759199468 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
17 Hb_010931_040 0.0765616636 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
18 Hb_000300_440 0.0777692114 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
19 Hb_000329_130 0.0788515668 - - beta-tubulin cofactor d, putative [Ricinus communis]
20 Hb_000109_100 0.0789261429 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_160 Hb_002235_160 Hb_000160_290 Hb_000160_290 Hb_002235_160--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_117552_010 Hb_117552_010 Hb_002235_160--Hb_117552_010 Hb_001235_200 Hb_001235_200 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_147737_010 Hb_147737_010 Hb_002235_160--Hb_147737_010 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_117552_010--Hb_000922_370 Hb_001599_030 Hb_001599_030 Hb_001235_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_010381_060 Hb_010381_060 Hb_001235_200--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_001235_200--Hb_000320_200 Hb_001235_200--Hb_007558_120 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_003124_130--Hb_147737_010 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_003124_130--Hb_000160_290 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_147737_010--Hb_000567_010 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.0453 38.8665 22.6396 26.1371 47.1226 72.2666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6768 14.7564 24.6645 34.5366 29.6721

CAGE analysis