Hb_000714_050

Information

Type -
Description -
Location Contig714: 48877-51228
Sequence    

Annotation

kegg
ID rcu:RCOM_1067950
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012073851.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
swissprot
ID Q9ZVX5
description Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
trembl
ID A0A067LFW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06674 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55416: 47947-48114 , PASA_asmbl_55417: 49197-49544 , PASA_asmbl_55419: 50236-50903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000714_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
2 Hb_010381_060 0.0531835182 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
3 Hb_001235_200 0.0579465143 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000320_200 0.0596162193 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
5 Hb_005892_030 0.0603079025 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
6 Hb_000329_090 0.0643060032 - - arginase, putative [Ricinus communis]
7 Hb_000329_130 0.0649953187 - - beta-tubulin cofactor d, putative [Ricinus communis]
8 Hb_000035_040 0.0653190636 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
9 Hb_000640_320 0.0661686503 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
10 Hb_000743_040 0.0671055507 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_001599_030 0.0673242129 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
12 Hb_020665_030 0.0687209871 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010315_090 0.0690514557 - - suppressor of ty, putative [Ricinus communis]
14 Hb_001417_050 0.0699489212 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
15 Hb_002749_110 0.0699699155 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
16 Hb_006449_050 0.0704815859 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
17 Hb_002043_170 0.072188191 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_002221_050 0.0749943461 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
19 Hb_008143_030 0.0771776761 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
20 Hb_000567_050 0.0781311713 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]

Gene co-expression network

sample Hb_000714_050 Hb_000714_050 Hb_010381_060 Hb_010381_060 Hb_000714_050--Hb_010381_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_001235_200--Hb_001599_030 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_001235_200--Hb_010381_060 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040 Hb_005892_030--Hb_000329_130 Hb_005892_030--Hb_007558_120 Hb_000059_140 Hb_000059_140 Hb_005892_030--Hb_000059_140 Hb_005892_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_005892_030--Hb_002749_110 Hb_000329_090--Hb_000743_040 Hb_000567_050 Hb_000567_050 Hb_000329_090--Hb_000567_050 Hb_000329_090--Hb_000320_200 Hb_000329_090--Hb_001235_200 Hb_000329_090--Hb_010381_060 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.98979 5.33538 3.39357 2.83988 10.3155 10.4774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92817 3.26868 3.45102 4.54511 5.39271

CAGE analysis