Hb_005892_030

Information

Type -
Description -
Location Contig5892: 23171-32809
Sequence    

Annotation

kegg
ID rcu:RCOM_1168220
description splicing factor u2af large subunit, putative
nr
ID XP_012069885.1
description PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
swissprot
ID Q24562
description Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1
trembl
ID A0A067L8D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02367 PE=4 SV=1
Gene Ontology
ID GO:0097159
description splicing factor u2af large subunit a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50120: 23089-23234 , PASA_asmbl_50121: 23299-30314 , PASA_asmbl_50122: 28503-30314 , PASA_asmbl_50124: 30327-32844 , PASA_asmbl_50125: 30327-32761
cDNA
(Sanger)
(ID:Location)		 008_B18.ab1: 23089-23234 , 012_I08.ab1: 23089-23234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_030 0.0 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
2 Hb_000714_050 0.0603079025 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
3 Hb_000329_130 0.0636414586 - - beta-tubulin cofactor d, putative [Ricinus communis]
4 Hb_007558_120 0.0707425826 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_000059_140 0.0730878745 - - rnase h, putative [Ricinus communis]
6 Hb_010381_060 0.0769116637 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
7 Hb_002749_110 0.0771938689 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_001085_320 0.0780359106 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
9 Hb_000796_190 0.0787395363 - - hypothetical protein F383_31148 [Gossypium arboreum]
10 Hb_001417_050 0.0788520035 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_017895_020 0.0789765715 - - Vacuolar protein sorting protein, putative [Ricinus communis]
12 Hb_009151_020 0.0792756237 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
13 Hb_000035_040 0.0798143648 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
14 Hb_001235_200 0.0800980355 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000347_570 0.0801041673 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
16 Hb_002093_030 0.0816996042 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
17 Hb_001178_150 0.0818644068 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
18 Hb_002422_050 0.082300177 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
19 Hb_001427_190 0.0823495613 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
20 Hb_010315_090 0.0823726462 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_005892_030 Hb_005892_030 Hb_000714_050 Hb_000714_050 Hb_005892_030--Hb_000714_050 Hb_000329_130 Hb_000329_130 Hb_005892_030--Hb_000329_130 Hb_007558_120 Hb_007558_120 Hb_005892_030--Hb_007558_120 Hb_000059_140 Hb_000059_140 Hb_005892_030--Hb_000059_140 Hb_010381_060 Hb_010381_060 Hb_005892_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_005892_030--Hb_002749_110 Hb_000714_050--Hb_010381_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000714_050--Hb_000329_130 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000796_190 Hb_000796_190 Hb_007558_120--Hb_000796_190 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0721 14.5997 12.0991 7.36946 26.3325 26.034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1489 7.72064 5.60035 11.8352 11.8353

CAGE analysis