Hb_000023_190

Information

Type -
Description -
Location Contig23: 443097-448775
Sequence    

Annotation

kegg
ID rcu:RCOM_0920330
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012076388.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
swissprot
ID Q9C5Z1
description Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1
trembl
ID A0A067KB82
description Eukaryotic translation initiation factor 3 subunit B OS=Jatropha curcas GN=JCGZ_07057 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23948: 443123-448753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_190 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
2 Hb_003464_020 0.0433911544 - - srpk, putative [Ricinus communis]
3 Hb_000567_050 0.0558799028 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
4 Hb_004218_240 0.0595242294 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
5 Hb_010381_060 0.0612743493 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_001488_410 0.0648561717 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
7 Hb_021409_170 0.0648723854 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
8 Hb_000600_070 0.0653219731 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
9 Hb_000436_040 0.0668795164 - - PREDICTED: transportin-1 [Jatropha curcas]
10 Hb_009535_020 0.069527609 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
11 Hb_011716_020 0.0725370171 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
12 Hb_002235_160 0.0727896889 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
13 Hb_033834_060 0.0728478579 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
14 Hb_100215_010 0.0732768536 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
15 Hb_000329_090 0.0756251897 - - arginase, putative [Ricinus communis]
16 Hb_016898_010 0.0774102902 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_003966_030 0.0776142051 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
18 Hb_000347_130 0.0776885619 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
19 Hb_003362_070 0.0789037658 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
20 Hb_000743_040 0.0793031928 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000023_190 Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_003464_020--Hb_010381_060 Hb_003464_020--Hb_021409_170 Hb_003464_020--Hb_001488_410 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_003428_070 Hb_003428_070 Hb_000567_050--Hb_003428_070 Hb_000743_040 Hb_000743_040 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_000567_050--Hb_002044_060 Hb_000567_050--Hb_010381_060 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_001221_040 Hb_001221_040 Hb_021409_170--Hb_001221_040 Hb_021409_170--Hb_000436_040 Hb_000046_440 Hb_000046_440 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.3961 31.2382 24.2104 37.0152 66.3065 94.1332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6063 21.4032 30.8271 48.0151 37.4903

CAGE analysis