Hb_000789_080

Information

Type -
Description -
Location Contig789: 31497-42250
Sequence    

Annotation

kegg
ID rcu:RCOM_1049090
description arginyl-tRNA synthetase, putative (EC:6.1.1.19)
nr
ID XP_012076843.1
description PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
swissprot
ID Q8KPU9
description Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2
trembl
ID A0A067KC47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07352 PE=3 SV=1
Gene Ontology
ID GO:0005737
description arginine--trna cytoplasmic-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58206: 31497-42243 , PASA_asmbl_58207: 31611-42129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_080 0.0 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
2 Hb_000531_090 0.0531625728 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
3 Hb_002893_150 0.0562823788 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_000335_010 0.0644148451 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_026099_010 0.0659871082 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_002400_180 0.0663202891 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002044_060 0.0666211035 - - elongation factor ts, putative [Ricinus communis]
8 Hb_021409_170 0.066786222 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_002942_160 0.0668084043 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_010931_080 0.0685334547 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
11 Hb_009265_080 0.0690896954 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_007590_080 0.0691073835 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
13 Hb_000035_040 0.0699221245 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
14 Hb_004678_060 0.0704769857 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_003581_120 0.0709143488 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
16 Hb_004370_030 0.071391357 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
17 Hb_000046_440 0.0741243636 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
18 Hb_000457_060 0.0742702688 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_003362_040 0.0742817875 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
20 Hb_001235_200 0.0745304798 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000789_080 Hb_000789_080 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_026099_010 Hb_026099_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_000531_090--Hb_002893_150 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_026099_010--Hb_004370_030 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.667 42.4054 26.2454 29.5859 76.1748 106.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.2955 25.8484 37.215 44.1087 27.4193

CAGE analysis