Hb_001221_040

Information

Type -
Description -
Location Contig1221: 14839-18796
Sequence    

Annotation

kegg
ID rcu:RCOM_1506680
description nucleolar protein nop56, putative
nr
ID XP_012079869.1
description PREDICTED: nucleolar protein 56-like [Jatropha curcas]
swissprot
ID O00567
description Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4
trembl
ID A0A067K7D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06699: 15027-18796
cDNA
(Sanger)
(ID:Location)		 009_C11.ab1: 16039-17203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_040 0.0 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
2 Hb_021409_170 0.0611856698 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_026099_010 0.0633449946 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
4 Hb_004450_010 0.0713264573 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
5 Hb_002675_060 0.0722681324 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
6 Hb_024990_010 0.0727154638 - - PREDICTED: la protein 1 [Jatropha curcas]
7 Hb_000046_440 0.0748507959 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
8 Hb_003464_020 0.0754751907 - - srpk, putative [Ricinus communis]
9 Hb_000789_080 0.0767558278 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
10 Hb_002652_040 0.0775697135 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_002044_060 0.0778873292 - - elongation factor ts, putative [Ricinus communis]
12 Hb_000035_040 0.0797144518 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
13 Hb_000335_010 0.0803240318 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000160_040 0.0804125396 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_007407_040 0.0810020432 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_007904_220 0.081579681 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
17 Hb_001541_080 0.0818442368 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_190 0.0826790179 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
19 Hb_125092_020 0.0829817104 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
20 Hb_000457_060 0.0836954504 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001221_040 Hb_001221_040 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_003464_020 Hb_003464_020 Hb_021409_170--Hb_003464_020 Hb_000436_040 Hb_000436_040 Hb_021409_170--Hb_000436_040 Hb_000023_190 Hb_000023_190 Hb_021409_170--Hb_000023_190 Hb_021409_170--Hb_000046_440 Hb_000789_080 Hb_000789_080 Hb_021409_170--Hb_000789_080 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_026099_010--Hb_004370_030 Hb_026099_010--Hb_000789_080 Hb_026099_010--Hb_000046_440 Hb_004450_010--Hb_002044_060 Hb_000956_030 Hb_000956_030 Hb_004450_010--Hb_000956_030 Hb_000768_110 Hb_000768_110 Hb_004450_010--Hb_000768_110 Hb_004450_010--Hb_004370_030 Hb_002272_180 Hb_002272_180 Hb_004450_010--Hb_002272_180 Hb_000213_070 Hb_000213_070 Hb_002675_060--Hb_000213_070 Hb_000035_040 Hb_000035_040 Hb_002675_060--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_002675_060--Hb_002652_040 Hb_002942_080 Hb_002942_080 Hb_002675_060--Hb_002942_080 Hb_000331_190 Hb_000331_190 Hb_002675_060--Hb_000331_190 Hb_024990_010--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.6024 32.8065 24.5113 23.0635 89.1418 111.589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.3769 29.9354 32.2257 62.3756 24.3715

CAGE analysis