Hb_026099_010

Information

Type -
Description -
Location Contig26099: 19578-25080
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22130g
description POPTRDRAFT_815182; hypothetical protein
nr
ID XP_012066337.1
description PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
swissprot
ID Q9ZT42
description E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1
trembl
ID A0A067L3B4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23898 PE=4 SV=1
Gene Ontology
ID GO:0005622
description e3 ubiquitin-protein ligase rhf2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27221: 19704-25030 , PASA_asmbl_27222: 23291-23553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026099_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
2 Hb_004108_140 0.0460131161 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
3 Hb_001221_040 0.0633449946 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
4 Hb_002044_060 0.063722367 - - elongation factor ts, putative [Ricinus communis]
5 Hb_004370_030 0.0656741537 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
6 Hb_000789_080 0.0659871082 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
7 Hb_000046_440 0.0663061043 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
8 Hb_010931_080 0.0694500751 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
9 Hb_002097_090 0.0704638077 - - Splicing factor 3A subunit, putative [Ricinus communis]
10 Hb_000160_040 0.0723955267 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_007632_020 0.0742366147 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
12 Hb_185679_010 0.0749571579 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
13 Hb_000803_300 0.074997737 - - nuclear movement protein nudc, putative [Ricinus communis]
14 Hb_003581_120 0.0757302879 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
15 Hb_000645_150 0.0771079112 - - zinc finger protein, putative [Ricinus communis]
16 Hb_002400_180 0.0775850632 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007590_080 0.077884191 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
18 Hb_000522_090 0.0781470247 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
19 Hb_004934_090 0.079113491 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
20 Hb_000879_140 0.0795506894 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_026099_010 Hb_026099_010 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_026099_010--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_185679_010 Hb_185679_010 Hb_004108_140--Hb_185679_010 Hb_003994_240 Hb_003994_240 Hb_004108_140--Hb_003994_240 Hb_001936_020 Hb_001936_020 Hb_004108_140--Hb_001936_020 Hb_003935_030 Hb_003935_030 Hb_004108_140--Hb_003935_030 Hb_004108_140--Hb_004370_030 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_001221_040--Hb_000046_440 Hb_002044_060--Hb_004370_030 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_002942_160 Hb_002942_160 Hb_002044_060--Hb_002942_160 Hb_002044_060--Hb_000789_080 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_000046_440--Hb_021409_170 Hb_000046_440--Hb_000789_080 Hb_000429_120 Hb_000429_120 Hb_000046_440--Hb_000429_120 Hb_000046_440--Hb_000567_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8688 18.4026 10.127 9.81627 35.0513 42.7995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6548 16.4183 14.9006 23.115 11.5351

CAGE analysis