Hb_003994_240

Information

Type -
Description -
Location Contig3994: 234995-241793
Sequence    

Annotation

kegg
ID rcu:RCOM_1573860
description hypothetical protein
nr
ID XP_007023708.1
description Mediator subunit 8 isoform 3 [Theobroma cacao]
swissprot
ID Q4V3C1
description Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1
trembl
ID A0A061G8Z4
description Mediator subunit 8 isoform 3 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator subunit 8 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39770: 235128-241774 , PASA_asmbl_39771: 240344-240596
cDNA
(Sanger)
(ID:Location)		 005_D02.ab1: 235128-238758 , 046_H11.ab1: 235128-238760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_240 0.0 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
2 Hb_001936_020 0.0607548541 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
3 Hb_004934_090 0.0661272331 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
4 Hb_003728_030 0.0685527505 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
5 Hb_001663_030 0.0700966857 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
6 Hb_004108_140 0.0701412236 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
7 Hb_002030_030 0.0706854829 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
8 Hb_010931_080 0.0729811969 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
9 Hb_000803_190 0.0766090024 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_004096_030 0.0818850192 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
11 Hb_033152_080 0.0841746748 - - RNA-binding protein Nova-1, putative [Ricinus communis]
12 Hb_026099_010 0.0842620525 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
13 Hb_000284_210 0.0862257077 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004370_030 0.0865492878 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
15 Hb_001019_230 0.0874660858 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
16 Hb_015292_030 0.0882786155 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
17 Hb_033642_010 0.0883243373 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
18 Hb_004204_020 0.0884411642 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
19 Hb_002603_120 0.0888673837 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
20 Hb_000429_120 0.0896743093 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]

Gene co-expression network

sample Hb_003994_240 Hb_003994_240 Hb_001936_020 Hb_001936_020 Hb_003994_240--Hb_001936_020 Hb_004934_090 Hb_004934_090 Hb_003994_240--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_002030_030 Hb_002030_030 Hb_003994_240--Hb_002030_030 Hb_004577_020 Hb_004577_020 Hb_001936_020--Hb_004577_020 Hb_000483_360 Hb_000483_360 Hb_001936_020--Hb_000483_360 Hb_001936_020--Hb_004108_140 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000059_210 Hb_000059_210 Hb_001936_020--Hb_000059_210 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003728_030--Hb_002030_030 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_000577_010 Hb_000577_010 Hb_001663_030--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220 Hb_026099_010 Hb_026099_010 Hb_004108_140--Hb_026099_010 Hb_185679_010 Hb_185679_010 Hb_004108_140--Hb_185679_010 Hb_003935_030 Hb_003935_030 Hb_004108_140--Hb_003935_030 Hb_004370_030 Hb_004370_030 Hb_004108_140--Hb_004370_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.9551 37.1219 13.7872 11.6712 40.0598 66.7614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.4683 32.4895 33.053 34.3457 18.478

CAGE analysis