Hb_004370_030

Information

Type -
Description -
Location Contig4370: 21704-27272
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02270g
description RNA recognition motif-containing family protein
nr
ID XP_012073990.1
description PREDICTED: RNA-binding protein 34 [Jatropha curcas]
swissprot
ID Q5M9F1
description RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
trembl
ID A0A067KJT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09337 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42480: 21706-27175
cDNA
(Sanger)
(ID:Location)		 016_E08.ab1: 26513-27175 , 044_E01.ab1: 26489-27175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004370_030 0.0 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
2 Hb_002044_060 0.0530241182 - - elongation factor ts, putative [Ricinus communis]
3 Hb_010931_080 0.0631402696 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
4 Hb_006252_040 0.0637414495 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
5 Hb_026099_010 0.0656741537 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_002942_160 0.0665597001 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_000768_110 0.066651726 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
8 Hb_023386_040 0.0669902614 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
9 Hb_004450_010 0.0705445774 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
10 Hb_000789_080 0.071391357 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
11 Hb_000567_050 0.0717952058 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
12 Hb_020000_020 0.0721414318 - - Troponin C, skeletal muscle, putative [Ricinus communis]
13 Hb_007632_020 0.0758667848 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
14 Hb_000166_110 0.0766690398 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
15 Hb_000820_170 0.0783539337 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
16 Hb_004108_140 0.0792541756 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
17 Hb_003428_070 0.0793461788 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
18 Hb_009265_080 0.0802364348 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
19 Hb_004204_020 0.0806255956 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
20 Hb_033834_060 0.0806488342 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004370_030 Hb_004370_030 Hb_002044_060 Hb_002044_060 Hb_004370_030--Hb_002044_060 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_026099_010 Hb_026099_010 Hb_004370_030--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_002044_060--Hb_026099_010 Hb_002044_060--Hb_002942_160 Hb_000789_080 Hb_000789_080 Hb_002044_060--Hb_000789_080 Hb_010931_080--Hb_002942_160 Hb_010931_080--Hb_000789_080 Hb_010931_080--Hb_026099_010 Hb_004934_090 Hb_004934_090 Hb_010931_080--Hb_004934_090 Hb_003362_040 Hb_003362_040 Hb_010931_080--Hb_003362_040 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.3173 43.3796 32.0514 29.1613 61.059 110.302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2809 40.2115 39.2211 51.7475 28.0031

CAGE analysis