Hb_002942_160

Information

Type -
Description -
Location Contig2942: 158204-165029
Sequence    

Annotation

kegg
ID tcc:TCM_014735
description Uncharacterized protein isoform 1
nr
ID XP_012090607.1
description PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
swissprot
ID Q8RWD5
description Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana GN=SCD2 PE=1 SV=1
trembl
ID A0A067JF57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30804: 158204-164913 , PASA_asmbl_30805: 162810-163219 , PASA_asmbl_30806: 163970-164977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_160 0.0 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
2 Hb_010931_080 0.0558403741 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
3 Hb_002044_060 0.0649429453 - - elongation factor ts, putative [Ricinus communis]
4 Hb_004370_030 0.0665597001 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
5 Hb_000789_080 0.0668084043 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
6 Hb_000364_080 0.0687508385 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
7 Hb_008695_120 0.0736699749 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
8 Hb_009265_080 0.0778814553 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
9 Hb_002400_180 0.0778879807 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003581_120 0.0783759672 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
11 Hb_002475_160 0.079135416 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
12 Hb_002716_140 0.0799785221 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_007632_020 0.0806520105 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
14 Hb_000866_030 0.0813558043 - - hypothetical protein RCOM_1615820 [Ricinus communis]
15 Hb_026099_010 0.0817701531 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
16 Hb_007590_080 0.0821329132 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
17 Hb_031091_010 0.0830080331 - - crooked neck protein, putative [Ricinus communis]
18 Hb_004096_030 0.0832504777 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
19 Hb_000567_050 0.0836748654 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
20 Hb_007643_050 0.0837061136 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002942_160 Hb_002942_160 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002044_060 Hb_002044_060 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_010931_080--Hb_004370_030 Hb_010931_080--Hb_000789_080 Hb_026099_010 Hb_026099_010 Hb_010931_080--Hb_026099_010 Hb_004934_090 Hb_004934_090 Hb_010931_080--Hb_004934_090 Hb_003362_040 Hb_003362_040 Hb_010931_080--Hb_003362_040 Hb_002044_060--Hb_004370_030 Hb_004450_010 Hb_004450_010 Hb_002044_060--Hb_004450_010 Hb_000567_050 Hb_000567_050 Hb_002044_060--Hb_000567_050 Hb_002044_060--Hb_026099_010 Hb_002044_060--Hb_000789_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_026099_010 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_000523_090 Hb_000523_090 Hb_000364_080--Hb_000523_090 Hb_000364_080--Hb_002044_060 Hb_134364_010 Hb_134364_010 Hb_000364_080--Hb_134364_010 Hb_002067_020 Hb_002067_020 Hb_000364_080--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_003581_120 Hb_003581_120 Hb_008695_120--Hb_003581_120 Hb_031091_010 Hb_031091_010 Hb_008695_120--Hb_031091_010 Hb_000322_100 Hb_000322_100 Hb_008695_120--Hb_000322_100 Hb_001019_170 Hb_001019_170 Hb_008695_120--Hb_001019_170 Hb_008695_120--Hb_002400_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3439 19.1645 10.307 11.2871 24.8162 47.8057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5018 14.9254 13.3421 13.2851 10.9037

CAGE analysis