Hb_031091_010

Information

Type -
Description -
Location Contig31091: 15231-24784
Sequence    

Annotation

kegg
ID rcu:RCOM_1691080
description crooked neck protein, putative
nr
ID XP_002509927.1
description crooked neck protein, putative [Ricinus communis]
swissprot
ID P63155
description Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1
trembl
ID B9RCP3
description Crooked neck protein, putative OS=Ricinus communis GN=RCOM_1691080 PE=4 SV=1
Gene Ontology
ID GO:0005634
description crooked neck-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32938: 15270-24831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031091_010 0.0 - - crooked neck protein, putative [Ricinus communis]
2 Hb_008695_120 0.058455552 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
3 Hb_001616_090 0.0651454564 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
4 Hb_002716_140 0.0692867833 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
5 Hb_000322_100 0.0704152759 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
6 Hb_003581_120 0.0712618472 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
7 Hb_007643_050 0.0727108645 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001829_010 0.0743928331 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
9 Hb_001019_170 0.0753296056 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
10 Hb_011942_080 0.0794608696 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
11 Hb_002400_180 0.080767135 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008714_020 0.0818525374 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
13 Hb_002942_160 0.0830080331 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_000333_100 0.083981113 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
15 Hb_000684_420 0.084461999 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
16 Hb_002475_160 0.084471061 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
17 Hb_173178_020 0.0845221507 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
18 Hb_004678_060 0.0851560518 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_006913_040 0.0870137586 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
20 Hb_000343_210 0.0886754519 - - ran-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_031091_010 Hb_031091_010 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_008695_120--Hb_003581_120 Hb_008695_120--Hb_000322_100 Hb_001019_170 Hb_001019_170 Hb_008695_120--Hb_001019_170 Hb_002400_180 Hb_002400_180 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_009411_020 Hb_009411_020 Hb_001616_090--Hb_009411_020 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_002716_140--Hb_003581_120 Hb_000034_050 Hb_000034_050 Hb_002716_140--Hb_000034_050 Hb_008714_020 Hb_008714_020 Hb_002716_140--Hb_008714_020 Hb_002716_140--Hb_002400_180 Hb_002716_140--Hb_008695_120 Hb_000322_100--Hb_000034_050 Hb_007336_020 Hb_007336_020 Hb_000322_100--Hb_007336_020 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020 Hb_003581_120--Hb_002400_180 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_003581_120--Hb_001019_170 Hb_003581_120--Hb_000034_050 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8409 18.5712 8.87466 10.0492 25.4911 35.4845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7252 12.2655 9.89016 7.01376 4.92861

CAGE analysis